View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13712_low_3 (Length: 453)

Name: NF13712_low_3
Description: NF13712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13712_low_3
NF13712_low_3
[»] chr4 (5 HSPs)
chr4 (19-453)||(20425580-20426014)
chr4 (378-453)||(20456103-20456178)
chr4 (179-247)||(42448932-42449000)
chr4 (158-267)||(9594622-9594731)
chr4 (149-218)||(54295973-54296042)
[»] chr1 (3 HSPs)
chr1 (134-335)||(51869090-51869291)
chr1 (367-443)||(51869323-51869399)
chr1 (179-267)||(19226216-19226304)
[»] chr2 (6 HSPs)
chr2 (168-453)||(44913185-44913458)
chr2 (135-453)||(44919181-44919487)
chr2 (367-450)||(44938477-44938560)
chr2 (179-263)||(29353303-29353387)
chr2 (179-249)||(34324469-34324538)
chr2 (194-267)||(7429859-7429932)
[»] chr8 (11 HSPs)
chr8 (350-449)||(15338845-15338944)
chr8 (350-449)||(15427910-15428009)
chr8 (350-449)||(15519214-15519313)
chr8 (179-249)||(4027041-4027111)
chr8 (158-249)||(31135864-31135955)
chr8 (226-290)||(12646273-12646337)
chr8 (172-241)||(22944619-22944688)
chr8 (231-290)||(12651410-12651469)
chr8 (168-214)||(15339071-15339117)
chr8 (168-214)||(15428136-15428182)
chr8 (168-214)||(15519440-15519486)
[»] chr5 (13 HSPs)
chr5 (175-318)||(30650704-30650847)
chr5 (169-223)||(39725451-39725505)
chr5 (133-238)||(37511979-37512084)
chr5 (175-263)||(31777051-31777138)
chr5 (158-238)||(31788624-31788704)
chr5 (378-447)||(31777247-31777316)
chr5 (169-218)||(40544245-40544294)
chr5 (174-236)||(21698733-21698795)
chr5 (374-436)||(30650897-30650959)
chr5 (179-245)||(42261493-42261559)
chr5 (158-248)||(42777097-42777187)
chr5 (169-218)||(42003166-42003215)
chr5 (169-265)||(16487574-16487670)
[»] chr7 (1 HSPs)
chr7 (179-249)||(30249012-30249082)
[»] chr6 (3 HSPs)
chr6 (148-277)||(29011968-29012097)
chr6 (149-277)||(32745715-32745843)
chr6 (196-290)||(23216815-23216909)
[»] scaffold0134 (1 HSPs)
scaffold0134 (196-290)||(17097-17191)
[»] scaffold0129 (2 HSPs)
scaffold0129 (373-415)||(9770-9812)
scaffold0129 (133-209)||(18043-18119)
[»] scaffold0068 (1 HSPs)
scaffold0068 (174-236)||(15115-15177)
[»] scaffold0831 (1 HSPs)
scaffold0831 (230-266)||(2126-2162)


Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 20425580 - 20426014
Alignment:
Q  19 aggtaggtagcaagttagtttcatattttccctcacgatctcggaagttgttacgagaggtttgcactcttccaacgacatttgattgttgagatggccg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  20425580 aggtaggtagcaagttagtttcatattttccctcacgatctcggaagttgttacgagaggtttgcactcttccaacgacatttgattgttgagatggctg 20425679  T
Q  119 aatctgtaatggaagaaaaggttacgaatcatattccttatgatatttcattctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatg 218  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20425680 aagctgtaatggaagaaaaggttacgaatcatattccttatgatatttcattctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatg 20425779  T
Q  219 tgtatacaaaccatggtctcttttatttgaagactctcatttcatgaacgagtttcgcactaacttcatatcaaagtctcactcttactacaatgataca 318  Q
     |||| |||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  20425780 cgtatgcaatgcatggtctcttttatttgaagactctcatttcatgaatgagtttcgcactaactgcatatctaagtctcactcttactacaatgataca 20425879  T
Q  319 tctgtcatcttatatcagtttatcgagactcattattctattcgttactctttctatttactttctggtgagaggtttgagaatcgagtcaaattagagt 418  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  20425880 tctctcatcttatatcagtttatcgagactcattattctattcgttactctttctatttactttctggtgagaggtttgagaatcgagtcaaattagact 20425979  T
Q  419 taccaaatccatttcaagaggaaaaccctttcttt 453  Q
    |||||||||||||||||||||||||||||||||||    
T  20425980 taccaaatccatttcaagaggaaaaccctttcttt 20426014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 453
Target Start/End: Complemental strand, 20456178 - 20456103
Alignment:
Q  378 actttctggtgagaggtttgagaatcgagtcaaattagagttaccaaatccatttcaagaggaaaaccctttcttt 453  Q
    |||||||| ||| | |||||||||| ||||||||||||| |||||||||| || ||| |||||||||| |||||||    
T  20456178 actttctgatgataagtttgagaatagagtcaaattagacttaccaaatctatgtcacgaggaaaaccatttcttt 20456103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 42448932 - 42449000
Alignment:
Q  179 tgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttg 247  Q
    ||||||||||||| |||||||| |||||  ||||| |||| |||| ||||| ||||||||| |||||||    
T  42448932 tgtcaaaacttcccttaaaatcattgaagagatttcaatgcgtatgcaaactatggtctctcttatttg 42449000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 267
Target Start/End: Complemental strand, 9594731 - 9594622
Alignment:
Q  158 atgatatttcattctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttgaagactctca 257  Q
    |||||||||| ||||| ||||| || ||| | ||| | |||||||| || ||||||||||||||   |||| |||||||||| |||| |||| ||  |||    
T  9594731 atgatatttccttctccattctatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatca 9594632  T
Q  258 tttcatgaac 267  Q
     |||||||||    
T  9594631 cttcatgaac 9594622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 54296042 - 54295973
Alignment:
Q  149 atattccttatgatatttcattctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatg 218  Q
    |||| ||| |||||||||| ||||| ||| | |||||||| ||| | |||||||| ||||||||||||||    
T  54296042 atatacctgatgatatttccttctccattttatcaaaactgcctcttaaatcttttaaacgatttgaatg 54295973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 134 - 335
Target Start/End: Original strand, 51869090 - 51869291
Alignment:
Q  134 aaaaggttacgaatcatattccttatgatatttcattctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatg 233  Q
    ||||||||| |||||| || ||  || || || |||||||| || ||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||    
T  51869090 aaaaggttaggaatcacatacccaatcatcttgcattctctgttttgtcaaaacttccgttaaaatctttgaaacgatttggatgtgcatacaaaccatg 51869189  T
Q  234 gtctcttttatttgaagactctcatttcatgaacgagtttcgcactaacttcatatcaaagtctcactcttactacaatgatacatctgtcatcttatat 333  Q
    |||||| |||||||||||| |||||||||||||| | ||  ||||||| |||||||| |   ||||||| |||| ||||||| ||||| || |||| |||    
T  51869190 gtctctcttatttgaagaccctcatttcatgaacaacttctgcactaatttcatatctattcctcactcatactccaatgatgcatctctcctcttgtat 51869289  T
Q  334 ca 335  Q
    ||    
T  51869290 ca 51869291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 443
Target Start/End: Original strand, 51869323 - 51869399
Alignment:
Q  367 tctttctatttactttctggtgagaggtttgagaatcgagtcaaattagagttaccaaatccatttcaagaggaaaa 443  Q
    ||||| |||| ||| | ||||||||||| ||||||| |||||||||||||  | ||||||||||||||| |||||||    
T  51869323 tctttgtattcactatgtggtgagaggtatgagaatggagtcaaattagatgttccaaatccatttcaataggaaaa 51869399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 19226304 - 19226216
Alignment:
Q  179 tgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttgaagactctcatttcatgaac 267  Q
    |||||||||| ||||| |||||| | || ||||||   ||||||| |||| | ||| ||||||| |||||| ||||| |||||||||||    
T  19226304 tgtcaaaactacctttgaaatctgtaaatcgatttacttgtgtatgcaaatcgtggactcttttgtttgaaaactcttatttcatgaac 19226216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 168 - 453
Target Start/End: Complemental strand, 44913458 - 44913185
Alignment:
Q  168 attctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttgaagactctcatttcatgaac 267  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||  ||||||||| || | ||||||||| |||||  ||||          
T  44913458 attctctattctgtcaaaactttctttaaaatctttaaaacgatttggatgcgtatgtaaaccatggactttcttatttgaaaactcttgtttc------ 44913365  T
Q  268 gagtttcgcactaacttcatatcaaagtctcactcttactacaatgatacatctgtcatcttatatcagtttatcgagactcattattctattcgttact 367  Q
          |||||||| || |||||||   ||| |||||| | |||||||| ||||||| |||||||| || || |||    | |||||||||||| || ||    
T  44913364 ------cgcactaattttatatcaattcctccctcttattgcaatgatatatctgtcctcttatatgaggttgtcgcccatgattattctattcattgct 44913271  T
Q  368 ctttctatttactttctggtgagaggtttgagaatcgagtcaaattagagttaccaaatccatttcaagaggaaaaccctttcttt 453  Q
    ||| |||||| ||||||||||| |||| |||||||| ||| |||||||| || |||||||| ||||||||||||||| ||||||||    
T  44913270 cttcctatttgctttctggtgataggtatgagaatcaagtaaaattagactttccaaatccgtttcaagaggaaaactctttcttt 44913185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 135 - 453
Target Start/End: Complemental strand, 44919487 - 44919181
Alignment:
Q  135 aaaggttacgaatcatattccttatgatatttcattctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatgg 234  Q
    |||||||| |||||| || ||  ||||| || ||||||||||||||||||||||||||||||||||||| || | |||||||||||||   ||| |||||    
T  44919487 aaaggttaggaatcacatacccaatgatcttgcattctctattctgtcaaaacttcctttaaaatcttttaagccatttgaatgtgtacgtaaatcatgg 44919388  T
Q  235 tctcttttatttgaagactctcatttcatgaacgagtttcgcactaacttcatatcaaagtctcactcttactacaatgatacatctgtcatcttatatc 334  Q
     |||| ||||||||| |||||   |||            |||||||| || |||||||   |||||||| | | ||  |||| |||| || ||||||||     
T  44919387 gctctcttatttgaaaactcttgcttc------------cgcactaattttatatcaattcctcactctgattgcaccgatatatctatcttcttatatg 44919300  T
Q  335 agtttatcgagactcattattctattcgttactctttctatttactttctggtgagaggtttgagaatcgagtcaaattagagttaccaaatccatttca 434  Q
    || || |||    | ||||||| ||||||| ||||| |||||| ||||||||||| |||| |||||||| ||| |||||||| || ||| ||||| ||||    
T  44919299 aggttgtcgcccatgattattcaattcgttgctcttcctatttgctttctggtgataggtatgagaatctagtaaaattagactttccagatccaattca 44919200  T
Q  435 agaggaaaaccctttcttt 453  Q
    ||||||||||  |||||||    
T  44919199 agaggaaaactttttcttt 44919181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 367 - 450
Target Start/End: Complemental strand, 44938560 - 44938477
Alignment:
Q  367 tctttctatttactttctggtgagaggtttgagaatcgagtcaaattagagttaccaaatccatttcaagaggaaaaccctttc 450  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||||||| || || || |  |||||||||||||||||||||    
T  44938560 tctttctattcactttctggtgcgaggtatgagaatcgagtcaaattagactttcccaaccagtttcaagaggaaaaccctttc 44938477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 263
Target Start/End: Complemental strand, 29353387 - 29353303
Alignment:
Q  179 tgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttgaagactctcatttcat 263  Q
    |||||||||||||||||||||||||||| || |||| ||| ||| | ||| |||||||||| ||||||||| || || |||||||    
T  29353387 tgtcaaaacttcctttaaaatctttgaagcgttttggatgcgtaaataaaacatggtctctcttatttgaaaaccctaatttcat 29353303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 34324469 - 34324538
Alignment:
Q  179 tgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttgaa 249  Q
    |||| ||| ||||||||||||||||| |||| |||| ||||||| ||||| |||||||||| |||||||||    
T  34324469 tgtcgaaagttcctttaaaatctttg-aacgttttggatgtgtacacaaaacatggtctctcttatttgaa 34324538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 7429932 - 7429859
Alignment:
Q  194 taaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttgaagactctcatttcatgaac 267  Q
    ||||||||||||| ||||||| ||| |||| |||| ||||| |  | |||||| ||||| ||||||||||||||    
T  7429932 taaaatctttgaagcgatttggatgcgtatgcaaatcatgggccatcttatttcaagaccctcatttcatgaac 7429859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 350 - 449
Target Start/End: Complemental strand, 15338944 - 15338845
Alignment:
Q  350 attattctattcgttactctttctatttactttctggtgagaggtttgagaatcgagtcaaattagagttaccaaatccatttcaagaggaaaacccttt 449  Q
    |||||||| ||| ||  ||||||||||||||||||| |||||||| |||||||| |||||||||||| || |||||||||||||||||||| ||||||||    
T  15338944 attattctcttcattgttctttctatttactttctgatgagaggtatgagaatcaagtcaaattagactttccaaatccatttcaagaggacaacccttt 15338845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 350 - 449
Target Start/End: Complemental strand, 15428009 - 15427910
Alignment:
Q  350 attattctattcgttactctttctatttactttctggtgagaggtttgagaatcgagtcaaattagagttaccaaatccatttcaagaggaaaacccttt 449  Q
    |||||||| ||| ||  ||||||||||||||||||| |||||||| |||||||| |||||||||||| || |||||||||||||||||||| ||||||||    
T  15428009 attattctcttcattgttctttctatttactttctgatgagaggtatgagaatcaagtcaaattagactttccaaatccatttcaagaggacaacccttt 15427910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 350 - 449
Target Start/End: Complemental strand, 15519313 - 15519214
Alignment:
Q  350 attattctattcgttactctttctatttactttctggtgagaggtttgagaatcgagtcaaattagagttaccaaatccatttcaagaggaaaacccttt 449  Q
    |||||||| ||| ||  ||||||||||||||||||| |||||||| |||||||| |||||||||||| || |||||||||||||||||||| ||||||||    
T  15519313 attattctcttcattgttctttctatttactttctgatgagaggtatgagaatcaagtcaaattagactttccaaatccatttcaagaggacaacccttt 15519214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 4027041 - 4027111
Alignment:
Q  179 tgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttgaa 249  Q
    |||| |||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| |||||||||    
T  4027041 tgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaccatggtctctcttatttgaa 4027111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 31135955 - 31135864
Alignment:
Q  158 atgatatttcattctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttgaa 249  Q
    |||||||||| ||||||||| | || ||  | ||||||||||  ||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  31135955 atgatatttccttctctattatctccaagttgcctttaaaattcttgaagcgatttgcatgtgtatgcaaaccatggtctcttttatttgaa 31135864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 12646273 - 12646337
Alignment:
Q  226 aaaccatggtctcttttatttgaagactctcatttcatgaacgagtttcgcactaacttcatatc 290  Q
    ||||||||||||||||||||| || || ||||||||||||||  ||| |||||||| ||||||||    
T  12646273 aaaccatggtctcttttatttcaaaaccctcatttcatgaacttgttccgcactaatttcatatc 12646337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 22944619 - 22944688
Alignment:
Q  172 tctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttt 241  Q
    |||||| |||| |||||||||||||| ||  ||||||||||| |||||||| ||||| ||||| ||||||    
T  22944619 tctattttgtcgaaacttcctttaaagtccatgaaacgatttaaatgtgtacacaaatcatgggctcttt 22944688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 12651410 - 12651469
Alignment:
Q  231 atggtctcttttatttgaagactctcatttcatgaacgagtttcgcactaacttcatatc 290  Q
    |||||||||||||||| || || ||||||||||||||  ||| |||||||| ||||||||    
T  12651410 atggtctcttttatttcaaaaccctcatttcatgaacttgttccgcactaatttcatatc 12651469  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 15339117 - 15339071
Alignment:
Q  168 attctctattctgtcaaaacttcctttaaaatctttgaaacgatttg 214  Q
    |||||||||| ||||||||||| |||||||| ||||||| |||||||    
T  15339117 attctctattttgtcaaaactttctttaaaacctttgaagcgatttg 15339071  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 15428182 - 15428136
Alignment:
Q  168 attctctattctgtcaaaacttcctttaaaatctttgaaacgatttg 214  Q
    |||||||||| ||||||||||| |||||||| ||||||| |||||||    
T  15428182 attctctattttgtcaaaactttctttaaaacctttgaagcgatttg 15428136  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 15519486 - 15519440
Alignment:
Q  168 attctctattctgtcaaaacttcctttaaaatctttgaaacgatttg 214  Q
    |||||||||| ||||||||||| |||||||| ||||||| |||||||    
T  15519486 attctctattttgtcaaaactttctttaaaacctttgaagcgatttg 15519440  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 318
Target Start/End: Original strand, 30650704 - 30650847
Alignment:
Q  175 attctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttgaagactctcatttcatgaacgagtttc 274  Q
    ||||| ||||||||||||||||||||||| ||||| |||| ||||||| | ||| |||||||||| ||||||||| | ||| ||||||| | |  ||| |    
T  30650704 attctatcaaaacttcctttaaaatctttaaaacgttttggatgtgtaaagaaaacatggtctctcttatttgaaaattcttatttcatcaccatgttcc 30650803  T
Q  275 gcactaacttcatatcaaagtctcactcttactacaatgataca 318  Q
    ||||||| |||||||| |   |||||||||||||  ||||||||    
T  30650804 gcactaatttcatatctattcctcactcttactatgatgataca 30650847  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 39725505 - 39725451
Alignment:
Q  169 ttctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtat 223  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  39725505 ttctctattctgtcaaaacttcctttcaaatctttgaagcgatttgaatgtgtat 39725451  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 37511979 - 37512084
Alignment:
Q  133 gaaaaggttacgaatcatattccttatgatatttcattctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccat 232  Q
    |||||||||| ||| |||||||   |||| ||| | ||||| ||| | |||||||| ||| | |||||||||||||||||||||| ||||| |||| |||    
T  37511979 gaaaaggttaggaaccatattcacgatgacattgccttctccattttatcaaaactgcctctcaaatctttgaaacgatttgaatatgtatgcaaatcat 37512078  T
Q  233 ggtctc 238  Q
    ||||||    
T  37512079 ggtctc 37512084  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 31777051 - 31777138
Alignment:
Q  175 attctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttgaagactctcatttcat 263  Q
    ||||| ||||||||||| ||||||||||| || || |||| ||||||| | ||| |||||||||| ||||||||| ||||| |||||||    
T  31777051 attctatcaaaacttccattaaaatctttaaagcg-tttggatgtgtaaagaaaacatggtctctcttatttgaaaactcttatttcat 31777138  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 31788624 - 31788704
Alignment:
Q  158 atgatatttcattctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctc 238  Q
    |||||||| | ||||||||||| |||||||| ||  | ||||||||||||||||||||||| |||  |||| |||||||||    
T  31788624 atgatattgccttctctattctatcaaaactccccattaaatctttgaaacgatttgaatgcgtacgcaaatcatggtctc 31788704  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 447
Target Start/End: Original strand, 31777247 - 31777316
Alignment:
Q  378 actttctggtgagaggtttgagaatcgagtcaaattagagttaccaaatccatttcaagaggaaaaccct 447  Q
    ||||||||||||||||||||||||| || |||||||  |  | |||||||||||||||| ||| ||||||    
T  31777247 actttctggtgagaggtttgagaatagactcaaattccatatgccaaatccatttcaagtggagaaccct 31777316  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 40544245 - 40544294
Alignment:
Q  169 ttctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatg 218  Q
    ||||||||||| |||||||| ||| | |||||||||||||||||||||||    
T  40544245 ttctctattctatcaaaactccctattaaatctttgaaacgatttgaatg 40544294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 21698733 - 21698795
Alignment:
Q  174 tattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtc 236  Q
    |||||| || |||||| |||| ||||||||||| ||||||||||||||| ||||  |||||||    
T  21698733 tattctttccaaactttcttttaaatctttgaagcgatttgaatgtgtaaacaagtcatggtc 21698795  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 436
Target Start/End: Original strand, 30650897 - 30650959
Alignment:
Q  374 atttactttctggtgagaggtttgagaatcgagtcaaattagagttaccaaatccatttcaag 436  Q
    ||| ||||||||||||||||||||||||| || |||||||  |  | ||||||||||||||||    
T  30650897 attcactttctggtgagaggtttgagaatagactcaaattccatatgccaaatccatttcaag 30650959  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 42261493 - 42261559
Alignment:
Q  179 tgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatt 245  Q
    |||||||||| ||||||||||| ||||| || |||  |||||||| |||| |||||||||| |||||    
T  42261493 tgtcaaaactgcctttaaaatcattgaagcggtttatatgtgtatgcaaatcatggtctctcttatt 42261559  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 42777097 - 42777187
Alignment:
Q  158 atgatatttcattctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttga 248  Q
    |||||||| | ||||||||||| |||||| | ||| | |||||    ||||||||||||||||| | |||| |||||||||| ||||||||    
T  42777097 atgatattgctttctctattctctcaaaattacctattaaatcaaccaaacgatttgaatgtgtgtgcaaatcatggtctctcttatttga 42777187  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 42003215 - 42003166
Alignment:
Q  169 ttctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatg 218  Q
    ||||||||||| || ||||||||| | ||||||||| |||||||||||||    
T  42003215 ttctctattctctccaaacttcctctcaaatctttggaacgatttgaatg 42003166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 265
Target Start/End: Complemental strand, 16487670 - 16487574
Alignment:
Q  169 ttctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttgaagactctcatttcatga 265  Q
    |||||| |||| |||||||| ||| | |||||||||||  | |||| ||| ||| ||||| ||||||| |||||||||||  || | ||||||||||    
T  16487670 ttctctcttctctcaaaactacctatcaaatctttgaagaggtttggatgcgtacacaaatcatggtcgcttttatttgataacccacatttcatga 16487574  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 30249012 - 30249082
Alignment:
Q  179 tgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttgaa 249  Q
    ||||||||||||||||||||||||| || || |||||||||| | ||||| |||||||||| |||||||||    
T  30249012 tgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgcacacaaaacatggtctctcttatttgaa 30249082  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 29011968 - 29012097
Alignment:
Q  148 catattccttatgatatttcattctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttg 247  Q
    ||||| ||| ||||||||   ||||||||||| ||||||||||||||  |||| ||||||||||| |||| |||   |||| |||||||||| || ||||    
T  29011968 catatacctgatgatattcacttctctattctatcaaaacttcctttgcaatcgttgaaacgattcgaatctgttcgcaaatcatggtctctcttgtttg 29012067  T
Q  248 aagactctcatttcatgaacgagtttcgca 277  Q
    || |  ||||||||||||||  ||||||||    
T  29012068 aaaatactcatttcatgaacatgtttcgca 29012097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 277
Target Start/End: Complemental strand, 32745843 - 32745715
Alignment:
Q  149 atattccttatgatatttcattctctattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttga 248  Q
    |||| ||| |||||||| | ||||| || || |||||||| ||| | |||||||| |||||||||||||| ||   |||| |||||||||| |||| |||    
T  32745843 atatacctgatgatattgccttctccatcctatcaaaactacctcttaaatcttttaaacgatttgaatgcgttcgcaaatcatggtctctcttatctga 32745744  T
Q  249 agactctcatttcatgaacgagtttcgca 277  Q
    | |  ||||||||||||||  ||||||||    
T  32745743 aaatactcatttcatgaacatgtttcgca 32745715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 23216909 - 23216815
Alignment:
Q  196 aaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttgaagactctcatttcatgaacgagtttcgcactaacttcatatc 290  Q
    |||||||||||  |||||||||||||   |||| |||||||||| ||| ||||  | |||||||||||||||  |||||||| ||||||| ||||    
T  23216909 aaatctttgaagagatttgaatgtgttcgcaaatcatggtctctcttaattgataattctcatttcatgaacatgtttcgcaataacttcttatc 23216815  T

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Target: scaffold0134 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 17191 - 17097
Alignment:
Q  196 aaatctttgaaacgatttgaatgtgtatacaaaccatggtctcttttatttgaagactctcatttcatgaacgagtttcgcactaacttcatatc 290  Q
    |||||||||||  |||||||||| || | |||| |||||||||| ||| ||||  | ||| ||||||||||| ||||||||| ||| ||| ||||    
T  17191 aaatctttgaagagatttgaatgcgtttgcaaatcatggtctctcttaattgataattcttatttcatgaacaagtttcgcaataatttcttatc 17097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 415
Target Start/End: Original strand, 9770 - 9812
Alignment:
Q  373 tatttactttctggtgagaggtttgagaatcgagtcaaattag 415  Q
    ||||| ||||||||||||||||||||||||  |||||||||||    
T  9770 tatttgctttctggtgagaggtttgagaataaagtcaaattag 9812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 18119 - 18043
Alignment:
Q  133 gaaaaggttacgaatcatattccttatgatatttcattctctattctgtcaaaacttcctttaaaatctttgaaacg 209  Q
    ||||||||||  |||||||||| | ||||| || |||| || |||||||| ||||| ||| | ||||||||||||||    
T  18119 gaaaaggttagcaatcatattcatgatgatcttgcattttccattctgtccaaactgcctcttaaatctttgaaacg 18043  T

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Target: scaffold0068 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 15177 - 15115
Alignment:
Q  174 tattctgtcaaaacttcctttaaaatctttgaaacgatttgaatgtgtatacaaaccatggtc 236  Q
    |||||| || |||||| |||| ||||||||||| ||||||||||||||| ||||  |||||||    
T  15177 tattctttccaaactttcttttaaatctttgaagcgatttgaatgtgtaaacaagtcatggtc 15115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0831 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 2162 - 2126
Alignment:
Q  230 catggtctcttttatttgaagactctcatttcatgaa 266  Q
    ||||||||||||||||||||||  |||||||||||||    
T  2162 catggtctcttttatttgaagatcctcatttcatgaa 2126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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