View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13713_high_2 (Length: 558)
Name: NF13713_high_2
Description: NF13713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13713_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 6 - 443
Target Start/End: Complemental strand, 51845101 - 51844664
Alignment:
| Q |
6 |
aggagcagagaactcattgttatcgagatgtaactcaccgaggaaacgaagatttgttaatgagtctggtatatttcctgagaatttattattgttgagc |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51845101 |
aggaccagagaactcattgttatcgagatgtaactcaccgaggaaacgaagatttgttaatgagtctggtatatttcctgagaatttattattgttgagc |
51845002 |
T |
|
| Q |
106 |
catactttcttgagagaacctaaatgagagaaaaaatctggaggaataggtcctgagaattggtttaatgataaataaagagctttaagagcaccaagtt |
205 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51845001 |
catactttcttgagagaacctaaatgagaaaaaaaatctggaggaataggtcctgagaattggtttaatgataaataaagagctttaagagcaccaagtt |
51844902 |
T |
|
| Q |
206 |
tgttgaattcaggaattgcaccagagaaagagttgttaacaaaactaatggttcttaacgttggaatttgtaaaagagaatcaatgtcaatttttccaga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51844901 |
tgttgaattcaggaattgcaccagagaaagagttgttaacaaaactaatggttcttaacgttggaatttgtaaaagagaatcaatgtcaatttttccaga |
51844802 |
T |
|
| Q |
306 |
gaggcctaaatcagtaagatgaagacttgagacgacattgtcgaaacaaatgacaccaacccatcttgaagaacatggattttgattaggaagccatgat |
405 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51844801 |
gaggcctaaatcggtaagatgaagacttgagatgacattgtcgaaacaaatgacaccaacccatcttgaagaacatggattttgattaggaagccatgat |
51844702 |
T |
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| Q |
406 |
gcaagagattgcgtgtttgtgaaggattgtttgagttt |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
51844701 |
gcaagagattgcgtgtttgtgaaggattgtttgagttt |
51844664 |
T |
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