View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13713_low_7 (Length: 223)
Name: NF13713_low_7
Description: NF13713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13713_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 11591122 - 11590933
Alignment:
| Q |
16 |
caacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctnnnnnnncatctacaactaccactgttgctgcagaaggaaccgaatc |
115 |
Q |
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| T |
11591122 |
caacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctaaaaaaacatctacaactaccactgttgctgcagaaggaaccgaatc |
11591023 |
T |
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| Q |
116 |
tcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatattcttc |
205 |
Q |
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| T |
11591022 |
tcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatattcttc |
11590933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 11646545 - 11646734
Alignment:
| Q |
16 |
caacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctnnnnnnncatctacaactaccactgttgctgcagaaggaaccgaatc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11646545 |
caacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctaaaaaaacatctacaactaccactgttgctgcagaaggaaccgaatc |
11646644 |
T |
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| Q |
116 |
tcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatattcttc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11646645 |
tcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcgtattcttc |
11646734 |
T |
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