View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13714_high_5 (Length: 560)
Name: NF13714_high_5
Description: NF13714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13714_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 512
Target Start/End: Original strand, 1743535 - 1744035
Alignment:
| Q |
17 |
caataagataacactaccagattgctatcgcgaagagagccaatgtttgagcaaatcaaaacactcaagtttatcatatttgtaccgagttctcgcaatc |
116 |
Q |
| |
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||||||| || ||||||||||| ||||||||||||||| |||| ||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
1743535 |
caataagctatcactaccagatggctatcgcgaagagatccaacgttcgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatc |
1743634 |
T |
|
| Q |
117 |
catcaacaggaagtgttctttggttggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1743635 |
catcaacaggaagtgttctttggttggaaagattaatcaaatcaaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaa |
1743734 |
T |
|
| Q |
217 |
gtgactaaaatctatgactttgagacttaaaaatctcgagagtagccgagaaaggaataaaacagtggaatcatgtattgttagagagaatttaactcgg |
316 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| ||||| ||| || |
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| T |
1743735 |
gtgactaaaatctatggctttgagccttaaaaatctcgagagtagccgagaaaggaatagaatagtggaatcatgtattgttaaagaaaatttcacttgg |
1743834 |
T |
|
| Q |
317 |
tttgtaaaggaaaggaatttcttgcagaccatagaaacagactccaaatcatgtccttggtcaaggagtttgaagattgattcccaacattcttgtggaa |
416 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||||| |||| |
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| T |
1743835 |
tttgtaatggaaaggaatttcttgcagaccatagaaacagactccaaatcttttccttggccaaggaatttgaagattgattcccaacattcttgaggaa |
1743934 |
T |
|
| Q |
417 |
aatctttcaccaacatatttgatataat-----ttgatctagaaagttaagatgagaatgatcaacaaatgtaatggcttaatcatttatcaactcaata |
511 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
1743935 |
aatctttcaataacatatttgatataataaatgttgatctagaaagttaagatgagaatgatcaacaaatttaatggcttaatcatttataaactcaata |
1744034 |
T |
|
| Q |
512 |
a |
512 |
Q |
| |
|
| |
|
|
| T |
1744035 |
a |
1744035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 442
Target Start/End: Complemental strand, 2006847 - 2006422
Alignment:
| Q |
17 |
caataagataacactaccagattgctatcgcgaagagagccaatgtttgagcaaatcaaaacactcaagtttatcatatttgtaccgagttctcgcaatc |
116 |
Q |
| |
|
||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |||| |||||| |||||||||| |
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| T |
2006847 |
caataagctatcactaccagatggctatcgcaaagagagccaatgtttgagcaaatcaaaaccctcaggtttatcatctttgaaccgagctctcgcaatc |
2006748 |
T |
|
| Q |
117 |
catcaacaggaagtgttctttggttggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaa |
216 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||| ||||| ||||||| |||||||||||||| ||||||||| | | |||| |||||||||||||| |
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|
| T |
2006747 |
catcaacaggaactgttctctggttggaaagattaacgaaatcaaggtccagcccagattgtgaaacttgatgaagcaagccttcaagttcaccattgaa |
2006648 |
T |
|
| Q |
217 |
gtgactaaaatctatgactttgagacttaaaaatctcgagagtagccgagaaaggaataaaacagtggaatcatgtattgttagagagaatttaactcgg |
316 |
Q |
| |
|
||| |||||||||| ||||||||| |||||||||| | |||||||||||| ||||||| |||||||| |||||||| ||||||||| |||||||||| |
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|
| T |
2006647 |
gtggctaaaatctaagactttgagccttaaaaatcccaagagtagccgaggaaggaatggaacagtgggatcatgtactgttagagatgctttaactcgg |
2006548 |
T |
|
| Q |
317 |
tttgtaaaggaaaggaatttcttgcagaccatagaaacagactccaaatcatgtccttggtcaaggagtttgaagattgattcccaacattcttgtggaa |
416 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | | ||||||||||||||||||||||| |||| |
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|
| T |
2006547 |
tttgtaatggaaaggaatttcttgcagaccatagaaacagactccaaatcatctccttggccaaggaatcttaagattgattcccaacattcttgaggaa |
2006448 |
T |
|
| Q |
417 |
aatctttcaccaacatatttgatata |
442 |
Q |
| |
|
|||||||||| || |||||||||||| |
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|
| T |
2006447 |
aatctttcactaatatatttgatata |
2006422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 457 - 535
Target Start/End: Original strand, 1749110 - 1749187
Alignment:
| Q |
457 |
gttaagatgagaatgatcaacaaatgtaatggcttaatcatttatcaactcaataaaccaatcatatttgagtgaaagt |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| | | |||||| |||||| || |||| ||||||||| |
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|
| T |
1749110 |
gttaagatgagaatgatcaacaaatgtaatggcttaataatttcttagctcaatgaaccaaccacattt-agtgaaagt |
1749187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 1498419 - 1498323
Alignment:
| Q |
144 |
aaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatgactttgag |
240 |
Q |
| |
|
||||||||| ||||| |||||||| | ||||| | ||||||||||||| | | ||||||||| ||| ||||||| |||| |||||||||||||| |
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|
| T |
1498419 |
aaagattaaccaaattaaggtccaatctagattataaaatttgatgaagcaagctttctagttctccaatgaagtggctaaggtctatgactttgag |
1498323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 1749015 - 1749055
Alignment:
| Q |
105 |
gttctcgcaatccatcaacaggaagtgttctttggttggaa |
145 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
1749015 |
gttctcgcaatccatcaaggggaagtgttctctggttggaa |
1749055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 44577603 - 44577538
Alignment:
| Q |
154 |
caaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtg |
219 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||| |
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| T |
44577603 |
caaatcaaggtccaacccagtttgtgaaatttgatgaagcaagcattctagttcaccattgaagtg |
44577538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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