View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13714_low_10 (Length: 420)
Name: NF13714_low_10
Description: NF13714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13714_low_10 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 15 - 405
Target Start/End: Original strand, 14180242 - 14180632
Alignment:
| Q |
15 |
aatatatcaatgaaacatagggattgggtgtattaattttctatgtaattagatcagagtacttcttgttaattttaatcaatattactcctatctcttt |
114 |
Q |
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| T |
14180242 |
aatatatcaataaaacatagggattgggtgtattaattttctatgtaattagatcagagtacttcttgttaattttaatcaatattattcctatctcttt |
14180341 |
T |
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| Q |
115 |
taattttcgtgattatcattcaacacaaattattgacacattatttttaatacagaatgagctcatgcaacaacaaatggagaatctccaaaggaaggtg |
214 |
Q |
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| T |
14180342 |
taattttcgtgattatcattcaacacaaattattgacacattattttcaatacagaatgagctcatgcaacaacaaatggagaatctccaaaggaaggtg |
14180441 |
T |
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| Q |
215 |
acatatataattaaactaaatatctctttaattaacatataggtactcacctatatcattgatcattaatagacacatcattaataattgtatatatgtt |
314 |
Q |
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| T |
14180442 |
acatatataattaaactaaatatctctttaattaacatataggtactcacctatatcattgatcattaatagacacatcattaataattgtatatatgtt |
14180541 |
T |
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| Q |
315 |
gtgattcaggaaagaatcttgcaagatgaaaacatgaatttatccaactgggtaagaatatttactcctactaatgttattaccacctttt |
405 |
Q |
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| T |
14180542 |
gtgattcaggaaagaatcttgcaagatgaaaacatgaatttatccaactgggtaagaatatttactcctactaatgttattaccacctttt |
14180632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 117 - 360
Target Start/End: Complemental strand, 95571 - 95345
Alignment:
| Q |
117 |
attttcgtgattatcattcaacacaaattattgacacattatttttaatacagaatgagctcatgcaacaacaaatggagaatctccaaaggaaggtgac |
216 |
Q |
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| T |
95571 |
attttcatgactatccttcaacacaaattattgacacattatttttaatgcagaatgagctcatgcagcagcaaattgataatatgatcaggaaggtgac |
95472 |
T |
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| Q |
217 |
atatataattaaactaaatatctctttaattaacatataggtactcacctatatcattgatcattaatagacacatcattaataattgtatatatg---t |
313 |
Q |
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| T |
95471 |
atatataattaaactaaccctctctttagtta--------------------atcattgactattaatagacacatgatccataattgtatatatgttat |
95392 |
T |
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| Q |
314 |
tgtgattcaggaaagaatcttgcaagatgaaaacatgaatttatcca |
360 |
Q |
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| T |
95391 |
tgtgattcaggaaagaatcttgcaagatgaaaatatcaatttatcca |
95345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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