View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13714_low_11 (Length: 373)
Name: NF13714_low_11
Description: NF13714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13714_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 25111159 - 25110885
Alignment:
| Q |
15 |
aaaataacaacatagtataaagttatggcaggaccaatgagacctcaaatcgtgctatttggctcctccataattcagatgagttttgataatggtggtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25111159 |
aaaataacaacatagtataaagttatggcaggaccaatgagacctcaaatcgtgctatttggctcctccataattcagatgagttttgataatggtggtt |
25111060 |
T |
|
| Q |
115 |
ggggtgctattctagctaatttgtatgctagaaaggtcattttctttctactctatatcattttaaggttgctattatatatatactttcatgttcttca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25111059 |
ggggtgctattctagctaatttgtatgctagaaaggtcattttctttctactctatatcattttatggttgctattatatatatactttcatgttcttca |
25110960 |
T |
|
| Q |
215 |
agtacatttttgcatattctgcatcttcttgtatannnnnnnagtgttttagggttaaaagtacacttacatata |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
25110959 |
agtacatttttgcatattctgcatcttcttgtatatttttttagtgttttagggttaaatgtacacttaaatata |
25110885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 25110853 - 25110796
Alignment:
| Q |
298 |
ggtatggtttgaaacgccgaagatatattattgatgaggtccagattttgattattac |
355 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
25110853 |
ggtatggtttgaaacgtcgaagatatattattaatgaggtccagattttgattcttac |
25110796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University