View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13714_low_12 (Length: 349)
Name: NF13714_low_12
Description: NF13714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13714_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 124 - 334
Target Start/End: Original strand, 8909214 - 8909424
Alignment:
| Q |
124 |
gtattaaggattttgatgtctgttctactttaccatgactatctgtctcttcttttcttatttcattttgcaaagctaatttgtaattattattttttga |
223 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8909214 |
gtattaaggattttgatgtctgatctactttaccatgactatttgtctcttctttttctatttcattttgcaaagctaatttgtaattattattttttga |
8909313 |
T |
|
| Q |
224 |
tttaaaggatttcaagttcccaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcg |
323 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8909314 |
tttaaaggatttcaagttcacaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaattcaaagcg |
8909413 |
T |
|
| Q |
324 |
aatatagttca |
334 |
Q |
| |
|
||||||||||| |
|
|
| T |
8909414 |
aatatagttca |
8909424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 8909091 - 8909178
Alignment:
| Q |
1 |
atttagtagaaatttagcatagtcgtattgaaaaagatgtgttggaagatataaggttagagattatatagttcatcacatggagatt |
88 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
8909091 |
atttagtagaaatttagcatagtcgtagtgaaaaagatgtgttggaagatataaggtcagagattatatagttcatcacatagagatt |
8909178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 124 - 334
Target Start/End: Complemental strand, 40882788 - 40882578
Alignment:
| Q |
124 |
gtattaaggattttgatgtctgttctactttaccatgactatctgtctcttcttttcttatttcattttgcaaagctaatttgtaattattattttttga |
223 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
40882788 |
gtattaaggaatttgatgtctgttctactctaccatgactatttgtctcttcttttcttatttcattttgcaaggctaatttgtagttattattttttga |
40882689 |
T |
|
| Q |
224 |
tttaaaggatttcaagttcccaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcg |
323 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40882688 |
tttaaaggatttcaagttcacaagttaccaaatattttttactatgaatattgattcttcataaatatcatatttttccattgtcaagaaagtcaaagcg |
40882589 |
T |
|
| Q |
324 |
aatatagttca |
334 |
Q |
| |
|
||||||||||| |
|
|
| T |
40882588 |
aatatagttca |
40882578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 40882911 - 40882824
Alignment:
| Q |
1 |
atttagtagaaatttagcatagtcgtattgaaaaagatgtgttggaagatataaggttagagattatatagttcatcacatggagatt |
88 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| ||| |||||| |
|
|
| T |
40882911 |
atttagtagaaatttagcatagtcgtagtgaaaaagatgtgttggaagatataaggtcagagattaaatagttcatcgcatagagatt |
40882824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University