View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13714_low_17 (Length: 237)

Name: NF13714_low_17
Description: NF13714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13714_low_17
NF13714_low_17
[»] chr5 (5 HSPs)
chr5 (1-222)||(40433610-40433831)
chr5 (154-204)||(41014980-41015030)
chr5 (181-212)||(35732030-35732061)
chr5 (116-204)||(17755177-17755260)
chr5 (128-204)||(38346896-38346972)
[»] chr8 (4 HSPs)
chr8 (161-220)||(16950273-16950332)
chr8 (142-204)||(18899953-18900015)
chr8 (167-204)||(37051628-37051665)
chr8 (175-204)||(44806292-44806321)
[»] chr7 (3 HSPs)
chr7 (142-222)||(5336520-5336600)
chr7 (175-204)||(7245947-7245976)
chr7 (175-223)||(38622877-38622925)
[»] chr6 (3 HSPs)
chr6 (179-223)||(5048507-5048551)
chr6 (176-204)||(9053920-9053948)
chr6 (178-222)||(13427711-13427755)
[»] chr4 (4 HSPs)
chr4 (175-222)||(32657562-32657607)
chr4 (159-222)||(28139936-28139999)
chr4 (175-203)||(4148443-4148471)
chr4 (175-211)||(20989519-20989555)
[»] chr3 (4 HSPs)
chr3 (142-222)||(51616357-51616437)
chr3 (175-222)||(21754254-21754301)
chr3 (142-203)||(38692402-38692461)
chr3 (179-219)||(2101660-2101700)
[»] chr1 (3 HSPs)
chr1 (167-222)||(15190884-15190939)
chr1 (175-221)||(12913236-12913282)
chr1 (142-222)||(11613060-11613140)
[»] scaffold0913 (1 HSPs)
scaffold0913 (178-223)||(1279-1324)
[»] scaffold0898 (1 HSPs)
scaffold0898 (178-223)||(4277-4322)
[»] chr2 (2 HSPs)
chr2 (174-223)||(24097765-24097814)
chr2 (177-222)||(44458228-44458273)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40433831 - 40433610
Alignment:
Q  1 aatatgctttggcatactctaaaacccatcaaaataaaacattcgttagttttattctagagataaaatcaatggatgtaatgaataaagtgttaataac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40433831 aatatgctttggcatactctaaaacccatcaaaataaaacattcattagttttattctagagataaaatcaatggatgtaatgaataaagtgttaataac 40433732  T
Q  101 aggcggtcttgtcaatcgcggattgtggaaaatatcgtttggttcaaattccactacactacagttctatatcaccgctatttgacaacactttgtacta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40433731 aggcggtcttgtcaatcgcggattgtggaaaatatcgtttggttcaaattccactacactacagttctataccaccgctatttgacaacactttgtacta 40433632  T
Q  201 aataatgtgtcgtggaacaata 222  Q
    |||||||| |||||||||||||    
T  40433631 aataatgtatcgtggaacaata 40433610  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 41014980 - 41015030
Alignment:
Q  154 ctacactacagttctatatcaccgctatttgacaacactttgtactaaata 204  Q
    |||||||||||| ||||||| | ||||| ||||||||||||||||||||||    
T  41014980 ctacactacagtgctatatcgcagctatatgacaacactttgtactaaata 41015030  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 212
Target Start/End: Complemental strand, 35732061 - 35732030
Alignment:
Q  181 tttgacaacactttgtactaaataatgtgtcg 212  Q
    ||||||||||||||||||||||||||||||||    
T  35732061 tttgacaacactttgtactaaataatgtgtcg 35732030  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 17755177 - 17755260
Alignment:
Q  116 tcgcggattgtggaaaatat-cgtttggttcaaattccactacactacagttctatatcaccgctatttgacaacactttgtactaaata 204  Q
    ||||||||| |||||||||| |||||| ||||||||||||||||     || |||||   || |||||||||||||||||||||||||||    
T  17755177 tcgcggattatggaaaatattcgtttg-ttcaaattccactaca-----gtgctatagtgcctctatttgacaacactttgtactaaata 17755260  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 38346972 - 38346896
Alignment:
Q  128 gaaaatatcgtttggttcaaattccactacactacagttctatatcaccgctatttgacaacactttgtactaaata 204  Q
    ||||||| || || |||||||||   |||| | ||||| ||||| |||||||||||||||||| |||||| ||||||    
T  38346972 gaaaatagcggttagttcaaattttgctacccaacagtgctatagcaccgctatttgacaacattttgtagtaaata 38346896  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 16950332 - 16950273
Alignment:
Q  161 acagttctatatcaccgctatttgacaacactttgtactaaataatgtgtcgtggaacaa 220  Q
    ||||||||||  ||| |||||||||||||| ||||||||||||||||| |||||||||||    
T  16950332 acagttctatggcactgctatttgacaacattttgtactaaataatgtatcgtggaacaa 16950273  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 18899953 - 18900015
Alignment:
Q  142 gttcaaattccactacactacagttctatatcaccgctatttgacaacactttgtactaaata 204  Q
    ||||||||||| |||||| ||||| ||||||  || ||||||||||||| |||||| ||||||    
T  18899953 gttcaaattccgctacacaacagtgctatattgcctctatttgacaacattttgtaataaata 18900015  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 37051665 - 37051628
Alignment:
Q  167 ctatatcaccgctatttgacaacactttgtactaaata 204  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  37051665 ctatagcactgctatttgacaacactttgtactaaata 37051628  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 44806321 - 44806292
Alignment:
Q  175 ccgctatttgacaacactttgtactaaata 204  Q
    ||||||||||||||||||||||||||||||    
T  44806321 ccgctatttgacaacactttgtactaaata 44806292  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 5336600 - 5336520
Alignment:
Q  142 gttcaaattccactacactacagttctatatcaccgctatttgacaacactttgtactaaataatgtgtcgtggaacaata 222  Q
    |||||||||| |||| |||| ||| ||||| || |||||||| |||||||||||| ||||| | ||| || ||||||||||    
T  5336600 gttcaaattctactatactatagtgctatagcaacgctatttaacaacactttgtgctaaacagtgtatcatggaacaata 5336520  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 7245947 - 7245976
Alignment:
Q  175 ccgctatttgacaacactttgtactaaata 204  Q
    ||||||||||||||||||||||||||||||    
T  7245947 ccgctatttgacaacactttgtactaaata 7245976  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 38622877 - 38622925
Alignment:
Q  175 ccgctatttgacaacactttgtactaaataatgtgtcgtggaacaatat 223  Q
    |||||||||||||||| ||||| ||||||| ||| || |||||||||||    
T  38622877 ccgctatttgacaacattttgtgctaaatagtgtatcatggaacaatat 38622925  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 5048551 - 5048507
Alignment:
Q  179 tatttgacaacactttgtactaaataatgtgtcgtggaacaatat 223  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  5048551 tatttgacaacactttgtactaaataatttgttatggaacaatat 5048507  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 9053920 - 9053948
Alignment:
Q  176 cgctatttgacaacactttgtactaaata 204  Q
    |||||||||||||||||||||||||||||    
T  9053920 cgctatttgacaacactttgtactaaata 9053948  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 13427711 - 13427755
Alignment:
Q  178 ctatttgacaacactttgtactaaataatgtgtcgtggaacaata 222  Q
    |||||| |||| | |||||||||||||||||||| ||||||||||    
T  13427711 ctatttcacaatattttgtactaaataatgtgtcatggaacaata 13427755  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 32657607 - 32657562
Alignment:
Q  175 ccgctatttgacaacactttgtactaaataatgtgtcgtggaacaata 222  Q
    ||||||||||||||||||  |||||||||||||| |||||||||||||    
T  32657607 ccgctatttgacaacact--gtactaaataatgtatcgtggaacaata 32657562  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 28139999 - 28139936
Alignment:
Q  159 ctacagttctatatcaccgctatttgacaacactttgtactaaataatgtgtcgtggaacaata 222  Q
    ||||||| ||||| | |||||||| ||||||||| ||||||||||||||| | | |||||||||    
T  28139999 ctacagtgctatagcgccgctattcgacaacactatgtactaaataatgtattgcggaacaata 28139936  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 4148471 - 4148443
Alignment:
Q  175 ccgctatttgacaacactttgtactaaat 203  Q
    |||||||||||||||||||||||||||||    
T  4148471 ccgctatttgacaacactttgtactaaat 4148443  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 20989555 - 20989519
Alignment:
Q  175 ccgctatttgacaacactttgtactaaataatgtgtc 211  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  20989555 ccgctatttgacaacattttgtactaaatagtgtgtc 20989519  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 51616357 - 51616437
Alignment:
Q  142 gttcaaattccactacactacagttctatatcaccgctatttgacaacactttgtactaaataatgtgtcgtggaacaata 222  Q
    ||||||||||| |||   |||||| | ||| |||||||||||||||||||| |||| ||||||  || |||||||||||||    
T  51616357 gttcaaattccgctatgttacagtgcaatagcaccgctatttgacaacactctgtattaaatagcgtatcgtggaacaata 51616437  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 21754301 - 21754254
Alignment:
Q  175 ccgctatttgacaacactttgtactaaataatgtgtcgtggaacaata 222  Q
    |||||||||||||||| ||||||||||||| ||| ||| |||||||||    
T  21754301 ccgctatttgacaacaatttgtactaaatagtgtatcgcggaacaata 21754254  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 38692402 - 38692461
Alignment:
Q  142 gttcaaattccactacactacagttctatatcaccgctatttgacaacactttgtactaaat 203  Q
    ||||||||| ||| |||||| ||| ||||| |  ||||||||||||||||||||||||||||    
T  38692402 gttcaaatttcacaacactagagtgctatagc--cgctatttgacaacactttgtactaaat 38692461  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 2101660 - 2101700
Alignment:
Q  179 tatttgacaacactttgtactaaataatgtgtcgtggaaca 219  Q
    |||||||||||||||||||||||||| ||| ||| ||||||    
T  2101660 tatttgacaacactttgtactaaatagtgtatcgcggaaca 2101700  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 15190939 - 15190884
Alignment:
Q  167 ctatatcaccgctatttgacaacactttgtactaaataatgtgtcgtggaacaata 222  Q
    ||||| |||||||||||||||||| |||||||| |||| ||| |||| ||||||||    
T  15190939 ctatagcaccgctatttgacaacattttgtactgaatagtgtatcgtagaacaata 15190884  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 12913236 - 12913282
Alignment:
Q  175 ccgctatttgacaacactttgtactaaataatgtgtcgtggaacaat 221  Q
    ||||||||||||||||||| |||| ||||| ||| ||||||||||||    
T  12913236 ccgctatttgacaacacttggtacaaaatagtgtatcgtggaacaat 12913282  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 11613140 - 11613060
Alignment:
Q  142 gttcaaattccactacactacagttctatatcaccgctatttgacaacactttgtactaaataatgtgtcgtggaacaata 222  Q
    ||||||||||||||||  ||||||  ||   |||||||||| ||||||||||||||||| | || || |||||| ||||||    
T  11613140 gttcaaattccactacggtacagtgttactgcaccgctattggacaacactttgtactagaaaaggtatcgtgggacaata 11613060  T

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Target: scaffold0913 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 1279 - 1324
Alignment:
Q  178 ctatttgacaacactttgtactaaataatgtgtcgtggaacaatat 223  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||    
T  1279 ctatttgacaacactttgtactaaatagtgtatcacggaacaatat 1324  T

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Target: scaffold0898 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 4322 - 4277
Alignment:
Q  178 ctatttgacaacactttgtactaaataatgtgtcgtggaacaatat 223  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||    
T  4322 ctatttgacaacactttgtactaaatagtgtatcacggaacaatat 4277  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 24097814 - 24097765
Alignment:
Q  174 accgctatttgacaacactttgtactaaataatgtgtcgtggaacaatat 223  Q
    ||||||||||||||||| |||||||||||||  || ||||||| ||||||    
T  24097814 accgctatttgacaacattttgtactaaataccgtatcgtggaccaatat 24097765  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 44458228 - 44458273
Alignment:
Q  177 gctatttgacaacactttgtactaaataatgtgtcgtggaacaata 222  Q
    |||||||||||| ||||||||||||||| ||| ||| |||||||||    
T  44458228 gctatttgacaatactttgtactaaatattgtatcgcggaacaata 44458273  T

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