View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13714_low_2 (Length: 672)

Name: NF13714_low_2
Description: NF13714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13714_low_2
NF13714_low_2
[»] chr3 (7 HSPs)
chr3 (1-663)||(5447925-5448582)
chr3 (500-611)||(5456535-5456646)
chr3 (542-584)||(5847486-5847528)
chr3 (1-38)||(18405763-18405800)
chr3 (1-34)||(34610738-34610771)
chr3 (1-38)||(25447177-25447214)
chr3 (1-33)||(16072973-16073005)
[»] chr6 (4 HSPs)
chr6 (1-38)||(35069544-35069581)
chr6 (3-64)||(10645319-10645381)
chr6 (1-33)||(21405086-21405118)
chr6 (1-37)||(34430406-34430442)
[»] chr1 (9 HSPs)
chr1 (1-38)||(15784418-15784455)
chr1 (1-38)||(33204326-33204363)
chr1 (1-38)||(2295197-2295234)
chr1 (1-38)||(38116009-38116046)
chr1 (6-38)||(1684036-1684068)
chr1 (5-33)||(7107448-7107476)
chr1 (1-33)||(39976142-39976174)
chr1 (1-29)||(41505784-41505812)
chr1 (1-64)||(50644187-50644251)
[»] chr8 (7 HSPs)
chr8 (1-33)||(38602433-38602465)
chr8 (1-52)||(35534545-35534596)
chr8 (1-38)||(1058009-1058046)
chr8 (1-38)||(9130251-9130288)
chr8 (1-30)||(30251386-30251415)
chr8 (1-38)||(43717866-43717903)
chr8 (1-64)||(41589660-41589724)
[»] chr7 (4 HSPs)
chr7 (1-33)||(19302495-19302527)
chr7 (1-38)||(18765385-18765422)
chr7 (1-64)||(18962515-18962579)
chr7 (1-33)||(33266418-33266450)
[»] chr4 (7 HSPs)
chr4 (1-33)||(27043762-27043794)
chr4 (1-38)||(15173235-15173272)
chr4 (1-38)||(17822797-17822834)
chr4 (1-38)||(54426144-54426181)
chr4 (1-33)||(21731588-21731620)
chr4 (1-37)||(29388716-29388752)
chr4 (1-33)||(42403955-42403987)
[»] chr2 (8 HSPs)
chr2 (1-64)||(27317453-27317517)
chr2 (1-40)||(18179048-18179087)
chr2 (1-38)||(1626001-1626038)
chr2 (1-38)||(3312178-3312215)
chr2 (1-38)||(29628674-29628711)
chr2 (1-38)||(30331852-30331889)
chr2 (352-401)||(43036515-43036564)
chr2 (1-33)||(15305780-15305812)
[»] chr5 (8 HSPs)
chr5 (1-31)||(15246941-15246971)
chr5 (1-38)||(9202680-9202717)
chr5 (1-38)||(12425674-12425711)
chr5 (1-38)||(15015944-15015981)
chr5 (1-38)||(35445776-35445813)
chr5 (1-41)||(4625827-4625867)
chr5 (1-33)||(10640059-10640091)
chr5 (1-33)||(39594913-39594945)


Alignment Details
Target: chr3 (Bit Score: 576; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 663
Target Start/End: Complemental strand, 5448582 - 5447925
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagaccgtattagagaactatgaaaacaactatgttttcgcttatgaagacaacttataactataca 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5448582 ttatttgagcttatctactgacataagttttgtaagactgtattagagaactatgaaaacaactatgttttcgcttatgaagacaacttataactataca 5448483  T
Q  101 aaaaa-ctttattttatcttttactatggaaataacccctgattgagctgatggtgttggtttgggacctggagtatgctcctcttttgctcttaggttt 199  Q
    ||||| ||||||||||||||||||||| ||||||||||||  |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5448482 aaaaaactttattttatcttttactatagaaataacccctagttgacctgatggtgttggtttgtgacctggagtatgctcctcttttgctcttaggttt 5448383  T
Q  200 aaatccctcgggcgccaagaaattcttgtgttgggtaagttcatacaaaacattgttctaactttaactgggccctcggctagtggaaggtgggattggt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5448382 aaatccctcgggcgccaagaaattcttgtgttgggtaagttcatacaaaacattgttctaactttaactgggccctcggctagtggaaggtgggattggt 5448283  T
Q  300 ctcccggattggtcagtcttcaggtcaaatattgaattgtgcacnnnnnnnggcttatacataagttattatgctataggctgcatataagttgtttatc 399  Q
    |||||||||| |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5448282 ctcccggattagtcagtcttcaggtcaaatattgaattgtgcacaaaaaaaggcttatacataagttattatgctataggctgcatataagttgtttatc 5448183  T
Q  400 cagccatgacttgtcttaattctatttgaagtaaacaatgttttcaatgacggatagggatggtcgcaagccaaaaatgggcaagtgaaaggttttagag 499  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5448182 caaccatgacttgtcttaattctatttgaagtaaacaatgttttcaatgacggatagggatggtcacaagccaaaaatgggcaagtgaaaggttttagag 5448083  T
Q  500 gaagcttggtaagccaggtaaaaaattaacatgatattagaaagtagaaagcagggaaaacccacacaaacacaatggagaaccataaggtgctgatggt 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5448082 gaagcttggtaagccaggtaaaaaattaacatgatattagaaagtagaaagcagggaaaacccacacaaacacaatggagaaccataaggtgctgatggt 5447983  T
Q  600 aattgtcaatttgcaacattgatagttttggttttggtccctccttttccctttcatttcagtc 663  Q
    ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||    
T  5447982 aattgtcaatttgcaacattgatagttt------tggtccctccttttccctttcatttcagtc 5447925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 500 - 611
Target Start/End: Complemental strand, 5456646 - 5456535
Alignment:
Q  500 gaagcttggtaagccaggtaaaaaattaacatgatattagaaagtagaaagcagggaaaacccacacaaacacaatggagaaccataaggtgctgatggt 599  Q
    ||||||||||||| ||  | |||||| || |||||| || ||||||| |||||| |||||||||||||||||||||| ||||| ||||| | || |||||    
T  5456646 gaagcttggtaagacaattgaaaaatgaatatgatactaaaaagtagtaagcagagaaaacccacacaaacacaatgaagaactataagctcctaatggt 5456547  T
Q  600 aattgtcaattt 611  Q
    ||||||||||||    
T  5456546 aattgtcaattt 5456535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 584
Target Start/End: Original strand, 5847486 - 5847528
Alignment:
Q  542 agtagaaagcagggaaaacccacacaaacacaatggagaacca 584  Q
    ||||| ||||| |||||||||||||||||||||||||||||||    
T  5847486 agtagtaagcatggaaaacccacacaaacacaatggagaacca 5847528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18405763 - 18405800
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  18405763 ttatttgagcttatctactgacataagttttgtgagac 18405800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34610738 - 34610771
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgta 34  Q
    ||||||||||||||||||||||||||||||||||    
T  34610738 ttatttgagcttatctactgacataagttttgta 34610771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25447177 - 25447214
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  25447177 ttatttgagtttatctactgacataagttttgtgagac 25447214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16072973 - 16073005
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgt 33  Q
    ||||||||||||||||| |||||||||||||||    
T  16072973 ttatttgagcttatctaatgacataagttttgt 16073005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35069544 - 35069581
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35069544 ttatttgagcttatctactgacataagttttgtaagac 35069581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 10645319 - 10645381
Alignment:
Q  3 atttgagcttatctactgacataagttttgtaagaccgtattagagaac-tatgaaaacaact 64  Q
    ||||||| ||||||| |||||||||||||||||||| || |  |||||| |||||||||||||    
T  10645319 atttgaggttatctaatgacataagttttgtaagactgtttgggagaacttatgaaaacaact 10645381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 21405086 - 21405118
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgt 33  Q
    |||||||||||||| ||||||||||||||||||    
T  21405086 ttatttgagcttatatactgacataagttttgt 21405118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34430406 - 34430442
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaaga 37  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  34430406 ttatttgagcttatctagtgacataagttttataaga 34430442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15784455 - 15784418
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  15784455 ttatttgagcttatctactaacataagttttgtaagac 15784418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33204326 - 33204363
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  33204326 ttatttgagcttatctactgacataagttttgtgagac 33204363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2295234 - 2295197
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  2295234 ttatttgagcttatctactggcataagttttgtgagac 2295197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38116009 - 38116046
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  38116009 ttatttgagcttatctactgacgtaagttttgtgagac 38116046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 1684036 - 1684068
Alignment:
Q  6 tgagcttatctactgacataagttttgtaagac 38  Q
    |||||||||||||||||||||||||||| ||||    
T  1684036 tgagcttatctactgacataagttttgtgagac 1684068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 7107448 - 7107476
Alignment:
Q  5 ttgagcttatctactgacataagttttgt 33  Q
    |||||||||||||||||||||||||||||    
T  7107448 ttgagcttatctactgacataagttttgt 7107476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39976142 - 39976174
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgt 33  Q
    ||||||||| |||||||||||||||||||||||    
T  39976142 ttatttgagattatctactgacataagttttgt 39976174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 41505812 - 41505784
Alignment:
Q  1 ttatttgagcttatctactgacataagtt 29  Q
    |||||||||||||||||||||||||||||    
T  41505812 ttatttgagcttatctactgacataagtt 41505784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 50644187 - 50644251
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagaccgtattagagaac-tatgaaaacaact 64  Q
    ||||||||||||||||||| ||||| ||||||| |||| || |  |||||| |||||||||||||    
T  50644187 ttatttgagcttatctactaacatatgttttgtgagactgtttgggagaacttatgaaaacaact 50644251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38602465 - 38602433
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgt 33  Q
    |||||||||||||||||||||||||||||||||    
T  38602465 ttatttgagcttatctactgacataagttttgt 38602433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 35534545 - 35534596
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagaccgtattagagaact 52  Q
    ||||||||||||||||||| ||||||||||||| |||| || | ||||||||    
T  35534545 ttatttgagcttatctactaacataagttttgtgagactgtttgagagaact 35534596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1058009 - 1058046
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  1058009 ttatttgagcttatctacttacataagttttgtgagac 1058046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9130251 - 9130288
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  9130251 ttatttgagcttatctactggcataagttttgtgagac 9130288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 30251386 - 30251415
Alignment:
Q  1 ttatttgagcttatctactgacataagttt 30  Q
    ||||||||||||||||||||||||||||||    
T  30251386 ttatttgagcttatctactgacataagttt 30251415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43717866 - 43717903
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  43717866 ttatttgagcttatctattgacataagttttgtgagac 43717903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41589724 - 41589660
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagaccgtattagagaac-tatgaaaacaact 64  Q
    |||||||||||| |||||||||||||| ||| | |||| || || |||||| |||||||||||||    
T  41589724 ttatttgagcttgtctactgacataagctttttgagactgttttggagaacttatgaaaacaact 41589660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 19302495 - 19302527
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgt 33  Q
    |||||||||||||||||||||||||||||||||    
T  19302495 ttatttgagcttatctactgacataagttttgt 19302527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18765422 - 18765385
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  18765422 ttatttgagcttatctattgacataagttttgtgagac 18765385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 18962515 - 18962579
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagaccgtattagagaac-tatgaaaacaact 64  Q
    ||||| || |||||||||||||||||||||||| |||| || || |||||| ||||||| |||||    
T  18962515 ttattcgatcttatctactgacataagttttgttagactgttttggagaacttatgaaaccaact 18962579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33266418 - 33266450
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgt 33  Q
    |||||||||||||||||| ||||||||||||||    
T  33266418 ttatttgagcttatctaccgacataagttttgt 33266450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27043762 - 27043794
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgt 33  Q
    |||||||||||||||||||||||||||||||||    
T  27043762 ttatttgagcttatctactgacataagttttgt 27043794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15173235 - 15173272
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  15173235 ttatttgaacttatctactgacataagttttgtgagac 15173272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17822797 - 17822834
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  17822797 ttatttgagcttatctactgacataagttctgtgagac 17822834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 54426181 - 54426144
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  54426181 ttatttgagcttatctactggcataagttttgtgagac 54426144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 21731588 - 21731620
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgt 33  Q
    |||||||||| ||||||||||||||||||||||    
T  21731588 ttatttgagcatatctactgacataagttttgt 21731620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29388752 - 29388716
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaaga 37  Q
    |||||||| |||||||||| |||||||||||||||||    
T  29388752 ttatttgaccttatctactaacataagttttgtaaga 29388716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42403955 - 42403987
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgt 33  Q
    ||||||||||||||| |||||||||||||||||    
T  42403955 ttatttgagcttatcaactgacataagttttgt 42403987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27317517 - 27317453
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagaccgtattagagaac-tatgaaaacaact 64  Q
    |||||||||||||||||| |||||||||||| | |||| || | ||||||| |||||||||||||    
T  27317517 ttatttgagcttatctaccgacataagttttatgagactgtttgagagaacttatgaaaacaact 27317453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18179087 - 18179048
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagaccg 40  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  18179087 ttatttgagcttatctactaacataagttttgtgagaccg 18179048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1626038 - 1626001
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    |||||||||||||||  |||||||||||||||||||||    
T  1626038 ttatttgagcttatcccctgacataagttttgtaagac 1626001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3312215 - 3312178
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  3312215 ttatttgagcttatctactgacgtaagttttgtgagac 3312178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29628674 - 29628711
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  29628674 ttatttgagcttatctactgtcataagttttgtgagac 29628711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30331889 - 30331852
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  30331889 ttatttcagcttatctactgacataagttttgtgagac 30331852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 43036564 - 43036515
Alignment:
Q  352 gcttatacataagttattatgctataggctgcatataagttgtttatcca 401  Q
    ||||||||||||||  |||||||||| || ||| ||||||||||||||||    
T  43036564 gcttatacataagtggttatgctataagcggcaaataagttgtttatcca 43036515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15305812 - 15305780
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgt 33  Q
    ||||||||||||||||| |||||||||||||||    
T  15305812 ttatttgagcttatctattgacataagttttgt 15305780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 15246971 - 15246941
Alignment:
Q  1 ttatttgagcttatctactgacataagtttt 31  Q
    |||||||||||||||||||||||||||||||    
T  15246971 ttatttgagcttatctactgacataagtttt 15246941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9202680 - 9202717
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  9202680 ttatttgagcttatctcctggcataagttttgtaagac 9202717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12425711 - 12425674
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  12425711 ttatttgagcttatctactgtcataagttttgtgagac 12425674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15015981 - 15015944
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  15015981 ttatttgagcttatctactgacataagctttgtgagac 15015944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35445776 - 35445813
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagac 38  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  35445776 ttatttgagtttatctactgacataagttttgtgagac 35445813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4625867 - 4625827
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgtaagaccgt 41  Q
    |||||||||||||||||| || |||||||||||| ||||||    
T  4625867 ttatttgagcttatctacggaaataagttttgtaggaccgt 4625827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10640091 - 10640059
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgt 33  Q
    ||||||||| |||||||||||||||||||||||    
T  10640091 ttatttgagtttatctactgacataagttttgt 10640059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39594945 - 39594913
Alignment:
Q  1 ttatttgagcttatctactgacataagttttgt 33  Q
    |||||||||||||||||| ||||||||||||||    
T  39594945 ttatttgagcttatctaccgacataagttttgt 39594913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University