View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13714_low_3 (Length: 662)
Name: NF13714_low_3
Description: NF13714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13714_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 17258372 - 17258734
Alignment:
| Q |
1 |
tggattgtacactatcgacgaacctcatttggttgccggttctcaaaatgtgctaagacaaagttagatgattcacttattatcaaaacttttcaaggac |
100 |
Q |
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| T |
17258372 |
tggattctacactatcgacgaacctcatttggttaccggttctcaaaatgtggtaagacaaagttagatgattcacttattatcaaaacttttcaaggac |
17258471 |
T |
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| Q |
101 |
gtttctacagcatgtatttattaattttgattcattattgtctgtaggatatcttggaatgtggcgattcttgctgcaacacagctataattgagactcc |
200 |
Q |
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| T |
17258472 |
gtttctgcagcatgtatttattaattttgcttcattattgtatgtaggatatcttagaatgtcgcgattcttgctgcaacacaactataattgagacttc |
17258571 |
T |
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| Q |
201 |
gatcagtatagtgggactgaagaggttattggacaacataacttctgattatgttggtgacgttaaatcaggagaggcctctattacc-aagccaatgaa |
299 |
Q |
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| T |
17258572 |
gatcagtaaagtgggactgaagaggtcattgg--aacataacttccgatgatgttggtgacgttaaatcaggagaggcttctattaccaaagccaatgaa |
17258669 |
T |
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| Q |
300 |
aatcgtccctgtgaagattgagcctgatgaat-taaataagagtttatgattctgttttagcaga |
363 |
Q |
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| T |
17258670 |
aatcgtccctgtgaagattgagcctgatgaatgaaaataagagtttatgattgtgttttagcaga |
17258734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 17258743 - 17258795
Alignment:
| Q |
397 |
ttggattatggctttaatcgtgtactttattaaacgttgttgtcttatttgaa |
449 |
Q |
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| T |
17258743 |
ttggattatggctttaatcgtgtacttcattaaacggtgttgtactatttgaa |
17258795 |
T |
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