View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13714_low_6 (Length: 554)

Name: NF13714_low_6
Description: NF13714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13714_low_6
NF13714_low_6
[»] chr3 (18 HSPs)
chr3 (36-289)||(4475495-4475747)
chr3 (411-553)||(4475051-4475193)
chr3 (418-475)||(41993151-41993208)
chr3 (409-474)||(30173617-30173683)
chr3 (423-476)||(45405080-45405133)
chr3 (343-415)||(4475311-4475383)
chr3 (409-496)||(6931105-6931193)
chr3 (430-477)||(8896054-8896101)
chr3 (409-474)||(4475268-4475334)
chr3 (422-496)||(30172074-30172148)
chr3 (409-474)||(30430295-30430361)
chr3 (429-474)||(27614039-27614084)
chr3 (429-496)||(4304333-4304400)
chr3 (422-496)||(2928097-2928171)
chr3 (422-476)||(44094321-44094375)
chr3 (435-476)||(4304166-4304207)
chr3 (423-476)||(43907899-43907952)
chr3 (429-470)||(45404826-45404867)
[»] chr1 (15 HSPs)
chr1 (409-496)||(14760039-14760126)
chr1 (422-496)||(30748954-30749028)
chr1 (422-496)||(30770405-30770479)
chr1 (422-494)||(13765561-13765633)
chr1 (409-467)||(16706500-16706559)
chr1 (428-478)||(8819017-8819066)
chr1 (409-474)||(16706360-16706426)
chr1 (423-496)||(30746776-30746849)
chr1 (423-496)||(30768227-30768300)
chr1 (428-496)||(23485857-23485925)
chr1 (409-496)||(30749105-30749193)
chr1 (409-496)||(30770556-30770644)
chr1 (422-496)||(15393148-15393222)
chr1 (422-496)||(22679505-22679579)
chr1 (423-472)||(22679364-22679413)
[»] chr2 (22 HSPs)
chr2 (423-496)||(16192593-16192666)
chr2 (429-496)||(39786319-39786386)
chr2 (409-474)||(981082-981147)
chr2 (409-496)||(16127921-16128009)
chr2 (411-474)||(35926749-35926813)
chr2 (428-495)||(16126405-16126471)
chr2 (420-474)||(35926901-35926955)
chr2 (435-496)||(16333341-16333402)
chr2 (409-473)||(32945638-32945703)
chr2 (418-474)||(18560521-18560577)
chr2 (423-496)||(32945792-32945863)
chr2 (428-495)||(16333154-16333220)
chr2 (422-496)||(32483649-32483723)
chr2 (422-496)||(12874859-12874933)
chr2 (434-496)||(27847860-27847922)
chr2 (435-477)||(27848024-27848066)
chr2 (429-474)||(4921349-4921394)
chr2 (451-496)||(16126223-16126268)
chr2 (433-474)||(26859208-26859248)
chr2 (451-496)||(39159301-39159346)
chr2 (434-474)||(18509522-18509562)
chr2 (428-496)||(37897578-37897646)
[»] chr4 (14 HSPs)
chr4 (422-496)||(33752712-33752786)
chr4 (409-496)||(53343708-53343795)
chr4 (417-475)||(34665152-34665210)
chr4 (409-496)||(13552827-13552915)
chr4 (419-474)||(17430738-17430793)
chr4 (434-475)||(28687485-28687526)
chr4 (421-474)||(34665005-34665058)
chr4 (422-474)||(17431139-17431191)
chr4 (409-496)||(28687626-28687713)
chr4 (409-476)||(32186632-32186700)
chr4 (428-496)||(54164651-54164719)
chr4 (422-474)||(7513552-7513604)
chr4 (431-475)||(33752326-33752370)
chr4 (409-496)||(54164469-54164557)
[»] scaffold0129 (1 HSPs)
scaffold0129 (422-478)||(6292-6348)
[»] chr7 (11 HSPs)
chr7 (409-496)||(12821182-12821270)
chr7 (422-496)||(7760611-7760685)
chr7 (409-496)||(9686450-9686538)
chr7 (409-496)||(19105419-19105507)
chr7 (418-474)||(20165016-20165072)
chr7 (409-496)||(31198463-31198550)
chr7 (422-496)||(31172354-31172428)
chr7 (435-474)||(3555390-3555429)
chr7 (422-496)||(19105259-19105332)
chr7 (409-474)||(31198323-31198389)
chr7 (409-496)||(29635238-29635325)
[»] chr8 (13 HSPs)
chr8 (417-496)||(33892039-33892118)
chr8 (422-496)||(31212316-31212390)
chr8 (409-496)||(9861571-9861659)
chr8 (409-496)||(31212449-31212537)
chr8 (409-496)||(33892201-33892289)
chr8 (418-496)||(6906448-6906526)
chr8 (409-475)||(14148851-14148917)
chr8 (418-496)||(8791882-8791960)
chr8 (409-496)||(15229619-15229707)
chr8 (417-496)||(6906267-6906345)
chr8 (429-476)||(20691296-20691343)
chr8 (409-474)||(10069876-10069942)
chr8 (409-474)||(10070024-10070090)
[»] chr5 (10 HSPs)
chr5 (422-496)||(25906136-25906210)
chr5 (411-477)||(5161070-5161135)
chr5 (417-474)||(12272527-12272584)
chr5 (422-496)||(13657728-13657802)
chr5 (422-496)||(29673294-29673367)
chr5 (418-496)||(20510470-20510548)
chr5 (422-496)||(22297765-22297839)
chr5 (435-496)||(25905961-25906022)
chr5 (409-496)||(22297927-22298015)
chr5 (436-472)||(24490720-24490756)
[»] chr6 (10 HSPs)
chr6 (409-474)||(7359585-7359650)
chr6 (422-496)||(13340446-13340520)
chr6 (418-496)||(12289983-12290061)
chr6 (422-476)||(13340622-13340676)
chr6 (409-474)||(24704332-24704398)
chr6 (409-474)||(30519705-30519771)
chr6 (422-496)||(31298903-31298977)
chr6 (432-496)||(34637428-34637491)
chr6 (409-496)||(34637589-34637677)
chr6 (428-464)||(10284387-10284423)
[»] scaffold0042 (1 HSPs)
scaffold0042 (411-476)||(30725-30790)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 4e-98; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 36 - 289
Target Start/End: Complemental strand, 4475747 - 4475495
Alignment:
Q  36 tccacccctaggtgcatgtccttgaaaaaagtattcaaattaaggtgaagactttactttaagtaaattttaatcaaatattgtacatcttcctttttgt 135  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||    
T  4475747 tccacccctaggtgcttgtccttgaaaaaagtattgaaattaaggtgaagactt-actttaagcaaattttaatcaaatattgtacatcttcatttttgt 4475649  T
Q  136 tattataaaattcaatttccttttagttcgtaagtatatgttcaactgacgaaaatattaaaattattagattaaaattttgattaagttttgaacctca 235  Q
    ||||||||||||||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||    
T  4475648 tattataaaattcaatttctttttagttcgtaagtatatgttggactgacgaaaatgttaaaattattagattaaaattttgattaaggttttaacctca 4475549  T
Q  236 tctcttttatctatgtgtatcaattttcagtaattattgctgtttcaacaattt 289  Q
    |||||||||| |||||||||||||||| | || |||||| |||||| |||||||    
T  4475548 tctcttttatttatgtgtatcaatttttaatagttattgttgtttcgacaattt 4475495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 411 - 553
Target Start/End: Complemental strand, 4475193 - 4475051
Alignment:
Q  411 ttttagaggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaaaaccctttcgttta 510  Q
    ||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  4475193 ttttaaaggattaaaaccctaaagaatattttaggggaattaaaatcaaatgttggtatatttaggaggactttttacttatttaaaacccttttgttta 4475094  T
Q  511 agaacattagtttagccataaaaaaggattaacagtgtaactt 553  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  4475093 agaacattagtttagccataaaaaaggattaacagcgtaactt 4475051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 41993151 - 41993208
Alignment:
Q  418 ggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaa 475  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| ||| |||||||||    
T  41993151 ggatcaaaagcctaaaaaatattttagggagattaaaatcaaatattgatatatttaa 41993208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 30173617 - 30173683
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||||||||| ||||||| ||||||||| ||||||||| || ||||||||||| ||||||||||||    
T  30173617 aattttagagggatcaaaagcctaaagaaaattttagggggactaaaatcaaatattggtatattta 30173683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 476
Target Start/End: Original strand, 45405080 - 45405133
Alignment:
Q  423 aaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaag 476  Q
    |||| ||||||||||||||||||| || |||||||||||||| |||||||||||    
T  45405080 aaaagcctaaagaatattttagggggactaaaatcaaatgttagtatatttaag 45405133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 415
Target Start/End: Complemental strand, 4475383 - 4475311
Alignment:
Q  343 atagcttcatggatgttttgtttagggttaaataaggaaaccgtgcctctacatataccaacatttaatttta 415  Q
    ||||||||||||||||||||||||||||||||| || |||  ||||  ||| ||||| |||||||| ||||||    
T  4475383 atagcttcatggatgttttgtttagggttaaattagaaaatagtgctcctaaatatatcaacatttgatttta 4475311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 6931105 - 6931193
Alignment:
Q  409 aattttagag-gatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||||||||| |||||||| |||||  ||| |||||  | || |||||||||||||| ||||||||||||||| | |||||||||||||    
T  6931105 aattttagagagatcaaaaacctaagaaatgttttaaagggactaaaatcaaatgttagtatatttaagaggactatttacttatttaa 6931193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 477
Target Start/End: Original strand, 8896054 - 8896101
Alignment:
Q  430 taaagaatattttagggagattaaaatcaaatgttggtatatttaaga 477  Q
    |||||||||||||||||||| |||||| |||||||||| |||||||||    
T  8896054 taaagaatattttagggagactaaaattaaatgttggtgtatttaaga 8896101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 4475268 - 4475334
Alignment:
Q  409 aattttaga-ggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||||||| ||||||||| ||||||||| ||||||  | |||||||||||||||||| ||||||||    
T  4475268 aattttagaaggatcaaaaacctaaagaaaattttaaagtgattaaaatcaaatgttgatatattta 4475334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 30172148 - 30172074
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| |||||||||||||||| || || ||||||||||||||| |||||||| | |||   |||||||||||||    
T  30172148 caaaaacctaaagaatattttaaggggactaaaatcaaatgttgatatatttagggggaccatttacttatttaa 30172074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 30430361 - 30430295
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||||||||| | ||||| ||||||||||||||||| |  | ||||||||||||||||||||||||    
T  30430361 aattttagagggaccaaaagcctaaagaatattttagaggaactaaaatcaaatgttggtatattta 30430295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 27614084 - 27614039
Alignment:
Q  429 ctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||||||||||||| ||||| |||||| |||||||||||||||||    
T  27614084 ctaaagaatattttatggagactaaaattaaatgttggtatattta 27614039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 496
Target Start/End: Original strand, 4304333 - 4304400
Alignment:
Q  429 ctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||| ||||||||||| | || |||||||||||||||||||||||| |  || | |||||||||||||    
T  4304333 ctaatgaatattttagagggactaaaatcaaatgttggtatatttagggagattatttacttatttaa 4304400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 2928171 - 2928097
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| ||||| ||| ||||||| | || || ||||||||||||||||||||| |||||   |||||||||||||    
T  2928171 caaaagcctaaggaaaattttagagggactagaatcaaatgttggtatatttaggaggaccatttacttatttaa 2928097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 476
Target Start/End: Original strand, 44094321 - 44094375
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaag 476  Q
    |||||||||||  ||||||||  ||||| ||||||||||||||| ||||||||||    
T  44094321 caaaaccctaagaaatattttcaggagactaaaatcaaatgttgatatatttaag 44094375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 476
Target Start/End: Complemental strand, 4304207 - 4304166
Alignment:
Q  435 aatattttagggagattaaaatcaaatgttggtatatttaag 476  Q
    |||||||||||  || ||||||||||||||||||||||||||    
T  4304207 aatattttaggaggactaaaatcaaatgttggtatatttaag 4304166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 476
Target Start/End: Original strand, 43907899 - 43907952
Alignment:
Q  423 aaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaag 476  Q
    |||| |||||| |||||||||||| || ||||||||||| || |||||||||||    
T  43907899 aaaaacctaaaaaatattttagggggactaaaatcaaatattagtatatttaag 43907952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 470
Target Start/End: Complemental strand, 45404867 - 45404826
Alignment:
Q  429 ctaaagaatattttagggagattaaaatcaaatgttggtata 470  Q
    |||| |||||||||||||||| |||||||||||||| |||||    
T  45404867 ctaaggaatattttagggagactaaaatcaaatgtttgtata 45404826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 14760039 - 14760126
Alignment:
Q  409 aattttagaggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||||||| ||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |||   |||||||||||||    
T  14760039 aattttaggggaccaaaagcctaaaaaatattttagggggattaaaatcaaatgttggtatatttaaggggatcatttacttatttaa 14760126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 30749028 - 30748954
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| ||||||||||||||||||| || ||||||||||| || ||||||||| |||||   |||||||||||||    
T  30749028 caaaagcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttacttatttaa 30748954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 30770479 - 30770405
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| ||||||||||||||||||| || ||||||||||| || ||||||||| |||||   |||||||||||||    
T  30770479 caaaagcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttacttatttaa 30770405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 494
Target Start/End: Complemental strand, 13765633 - 13765561
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttattt 494  Q
    ||||| |||||||||||||||| || || |||||||||||||||||||||||| |  || | |||||||||||    
T  13765633 caaaaacctaaagaatattttatggggactaaaatcaaatgttggtatatttagggagattatttacttattt 13765561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 467
Target Start/End: Original strand, 16706500 - 16706559
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggt 467  Q
    ||||||||||| | ||||| ||||||||||||||||||| || |||||||||||||||||    
T  16706500 aattttagagggaccaaaaacctaaagaatattttagggggactaaaatcaaatgttggt 16706559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 478
Target Start/End: Complemental strand, 8819066 - 8819017
Alignment:
Q  428 cctaaagaatattttagggagattaaaatcaaatgttggtatatttaagag 478  Q
    |||||| ||||||||||||||||||||||||||||||  ||||||||||||    
T  8819066 cctaaaaaatattttagggagattaaaatcaaatgtt-atatatttaagag 8819017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 16706426 - 16706360
Alignment:
Q  409 aattttaga-ggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||||||| ||| ||||| ||||||||| ||||||| | || ||||||||||||||||||||||||    
T  16706426 aattttagaaggaccaaaagcctaaagaaaattttagagggactaaaatcaaatgttggtatattta 16706360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 423 - 496
Target Start/End: Complemental strand, 30746849 - 30746776
Alignment:
Q  423 aaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||| |||||||||||||||| ||| | ||||||||||| || ||||||||||| |||   |||||||||||||    
T  30746849 aaaaacctaaagaatattttaaggaaactaaaatcaaatattagtatatttaaggggaccatttacttatttaa 30746776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 423 - 496
Target Start/End: Complemental strand, 30768300 - 30768227
Alignment:
Q  423 aaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||| |||||||||||||||| ||| | ||||||||||| || ||||||||||| |||   |||||||||||||    
T  30768300 aaaaacctaaagaatattttaaggaaactaaaatcaaatattagtatatttaaggggaccatttacttatttaa 30768227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 496
Target Start/End: Original strand, 23485857 - 23485925
Alignment:
Q  428 cctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||||||||||| |  ||||||||||||| ||||||| |||| |||||   |||||||||||||    
T  23485857 cctaaagaatattttagaggaattaaaatcaaattttggtatgtttaggaggatcatttacttatttaa 23485925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 30749105 - 30749193
Alignment:
Q  409 aattttagaggatc-aaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||||||||||| | |||| | |||| |||||||||| |  ||||||||||||||||| |||||||| ||||| | ||||| |||||||    
T  30749105 aattttagaggaaccaaaaacataaaaaatattttagaggaattaaaatcaaatgttgatatatttaggaggattatttacgtatttaa 30749193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 30770556 - 30770644
Alignment:
Q  409 aattttagaggatc-aaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||||||||||| | |||| | |||| |||||||||| |  ||||||||||||||||| |||||||| ||||| | ||||| |||||||    
T  30770556 aattttagaggaaccaaaaacataaaaaatattttagaggaattaaaatcaaatgttgatatatttaggaggattatttacgtatttaa 30770644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 15393222 - 15393148
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| ||||| ||||||||||||| ||  ||||| |||| |||||||||||  ||||| | |||||||||||||    
T  15393222 caaaagcctaaggaatattttagggggacgaaaattaaatattggtatatttgtgaggactatttacttatttaa 15393148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 496
Target Start/End: Original strand, 22679505 - 22679579
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| |||||  |||||||||| | || |||||||||||||||||||||||| | |||   |||||||||||||    
T  22679505 caaaaacctaacaaatattttagagggactaaaatcaaatgttggtatatttagggggatcgtttacttatttaa 22679579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 472
Target Start/End: Complemental strand, 22679413 - 22679364
Alignment:
Q  423 aaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatt 472  Q
    |||| ||||||| ||||||||||| ||||||||||| |||||| ||||||    
T  22679413 aaaaacctaaaggatattttagggggattaaaatcatatgttgatatatt 22679364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 423 - 496
Target Start/End: Original strand, 16192593 - 16192666
Alignment:
Q  423 aaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||||||    
T  16192593 aaaagcctaaggaatattttagggagactaaaatcaaatgttgatatatttaagaggactatttacttatttaa 16192666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 496
Target Start/End: Complemental strand, 39786386 - 39786319
Alignment:
Q  429 ctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||| ||| ||||||| |||| ||||||||||||||||||||||||| |||| | |||||||||||||    
T  39786386 ctaaggaaaattttagcgagactaaaatcaaatgttggtatatttaataggattatttacttatttaa 39786319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 981082 - 981147
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||||||||    
T  981082 aattttagagggaccaaaagcctaaagaatattttaggg-gactaaaatcaaatgttggtatattta 981147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 496
Target Start/End: Complemental strand, 16128009 - 16127921
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||||| | ||||| |||| | |||||||||||  || |||||| ||||||||||||||||||| ||| | |||||||||||||    
T  16128009 aattttagagggaccaaaaacctacataatattttaggaggactaaaattaaatgttggtatatttaaggggactatttacttatttaa 16127921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 474
Target Start/End: Complemental strand, 35926813 - 35926749
Alignment:
Q  411 ttttagaggatc-aaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    |||||||||| | |||| |||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  35926813 ttttagaggaactaaaaacctaaaaaatattttatggagactaaaatcaaatgttggtatattta 35926749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 495
Target Start/End: Original strand, 16126405 - 16126471
Alignment:
Q  428 cctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttattta 495  Q
    ||||||||||||||||||  |||||||||||||| |||||||||||| |||||   ||||||||||||    
T  16126405 cctaaagaatattttaggc-gattaaaatcaaattttggtatatttatgaggatcatttacttattta 16126471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 474
Target Start/End: Original strand, 35926901 - 35926955
Alignment:
Q  420 atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||||| |||||| |||||||||  |||| ||||||||||||||||||||||||    
T  35926901 atcaaaaacctaaaaaatattttattgagactaaaatcaaatgttggtatattta 35926955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 435 - 496
Target Start/End: Original strand, 16333341 - 16333402
Alignment:
Q  435 aatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||| ||||||  ||||||||| ||||||||||||||||||| ||| | |||||||||||||    
T  16333341 aataatttaggaggattaaaattaaatgttggtatatttaaggggactgtttacttatttaa 16333402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 473
Target Start/End: Complemental strand, 32945703 - 32945638
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattt 473  Q
    ||||||||||| |||||||  ||||| ||||||||| || || |||||||||||||||||||||||    
T  32945703 aattttagagggatcaaaaatctaaataatattttatggggactaaaatcaaatgttggtatattt 32945638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 474
Target Start/End: Complemental strand, 18560577 - 18560521
Alignment:
Q  418 ggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    |||||||||  |||| |||||||||| ||||| ||||||||||||||| ||||||||    
T  18560577 ggatcaaaagtctaaggaatattttaaggagactaaaatcaaatgttgatatattta 18560521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 496
Target Start/End: Original strand, 32945792 - 32945863
Alignment:
Q  423 aaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatt-tttacttatttaa 496  Q
    |||| |||| ||||||||||| ||| ||||||||||||| |||||||||||   ||||||| |||||||||||||    
T  32945792 aaaaacctagagaatattttatggaaattaaaatcaaattttggtatattt---aggaattatttacttatttaa 32945863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 495
Target Start/End: Complemental strand, 16333220 - 16333154
Alignment:
Q  428 cctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttattta 495  Q
    ||||||||||||||||||  |||||||||||||| ||| |||||||| |||||   ||||||||||||    
T  16333220 cctaaagaatattttaggc-gattaaaatcaaattttgatatatttatgaggatcatttacttattta 16333154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 32483723 - 32483649
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatt-tttacttatttaa 496  Q
    ||||| |||||| ||||||||| ||  |||||||||||||||  |||||||||| ||||||| |||||||||||||    
T  32483723 caaaagcctaaaaaatattttatgggaattaaaatcaaatgtcagtatatttaa-aggaattatttacttatttaa 32483649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 496
Target Start/End: Original strand, 12874859 - 12874933
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| |||||| |||||||||| | || ||||||||||| |||||||||||  || || | |||||||||||||    
T  12874859 caaaaacctaaataatattttagagggactaaaatcaaatattggtatatttgggaagactatttacttatttaa 12874933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 496
Target Start/End: Complemental strand, 27847922 - 27847860
Alignment:
Q  434 gaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||||||||| |  || |||||||||||||||||||||||| | ||| | |||||||||||||    
T  27847922 gaatattttaagtggactaaaatcaaatgttggtatatttatggggactatttacttatttaa 27847860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 477
Target Start/End: Original strand, 27848024 - 27848066
Alignment:
Q  435 aatattttagggagattaaaatcaaatgttggtatatttaaga 477  Q
    |||||||||  |||| |||||||||||||||||||||||||||    
T  27848024 aatattttaaagagactaaaatcaaatgttggtatatttaaga 27848066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 474
Target Start/End: Original strand, 4921349 - 4921394
Alignment:
Q  429 ctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||| ||||||||| || |||||||||||||||||| ||||||||    
T  4921349 ctaaaaaatattttaaggggattaaaatcaaatgttgatatattta 4921394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 496
Target Start/End: Complemental strand, 16126268 - 16126223
Alignment:
Q  451 taaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||||| ||||||||||||||||||| ||| | |||||||||||||    
T  16126268 taaaattaaatgttggtatatttaaggggactgtttacttatttaa 16126223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 474
Target Start/End: Complemental strand, 26859248 - 26859208
Alignment:
Q  433 agaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  26859248 agaatattttaggg-gactaaaatcaaatgttggtatattta 26859208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 496
Target Start/End: Original strand, 39159301 - 39159346
Alignment:
Q  451 taaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||||||||||||| ||||||||||||||| | || ||||||||||    
T  39159301 taaaatcaaatgttagtatatttaagaggactattaacttatttaa 39159346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 474
Target Start/End: Complemental strand, 18509562 - 18509522
Alignment:
Q  434 gaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||||||||| | || ||||||||||||||||||||||||    
T  18509562 gaatattttagagggactaaaatcaaatgttggtatattta 18509522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 496
Target Start/End: Complemental strand, 37897646 - 37897578
Alignment:
Q  428 cctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| ||||||||||| | || ||||||||||||||||| |||||| ||||  | ||| |||||||||    
T  37897646 cctaaggaatattttagagggagtaaaatcaaatgttggtctatttaggagggctatttccttatttaa 37897578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 422 - 496
Target Start/End: Original strand, 33752712 - 33752786
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| ||||   |||||||||||||    
T  33752712 caaaagcctaaagaatattttagggagactaaaatcaaatgttgatatatttaaaaggaccgtttacttatttaa 33752786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 496
Target Start/End: Complemental strand, 53343795 - 53343708
Alignment:
Q  409 aattttagaggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||||||||||| | ||| |||||  |||||||||  |||| |||||||||| |||||||||||||||||||   |||||||||||||    
T  53343795 aattttagaggacccaaaacctaagaaatattttaacgagactaaaatcaaacgttggtatatttaagaggaccatttacttatttaa 53343708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 417 - 475
Target Start/End: Original strand, 34665152 - 34665210
Alignment:
Q  417 aggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaa 475  Q
    |||| ||||| |||||| |||||||||||| || |||||||||||||||||||||||||    
T  34665152 aggaacaaaagcctaaaaaatattttagggtgactaaaatcaaatgttggtatatttaa 34665210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 13552827 - 13552915
Alignment:
Q  409 aattttaga-ggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||| ||| ||||| |||||| ||||||||| || || ||||||||||| ||| |||||||| ||||| | |||||||||||||    
T  13552827 aattttagaaggaccaaaagcctaaataatattttatggggactaaaatcaaatattgatatatttaggaggactatttacttatttaa 13552915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 419 - 474
Target Start/End: Complemental strand, 17430793 - 17430738
Alignment:
Q  419 gatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    |||||||| ||||| ||||||||||| | || ||||||||||||||||||||||||    
T  17430793 gatcaaaagcctaaggaatattttagagggactaaaatcaaatgttggtatattta 17430738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 434 - 475
Target Start/End: Complemental strand, 28687526 - 28687485
Alignment:
Q  434 gaatattttagggagattaaaatcaaatgttggtatatttaa 475  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  28687526 gaatattttagagagattaaaattaaatgttggtatatttaa 28687485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 474
Target Start/End: Complemental strand, 34665058 - 34665005
Alignment:
Q  421 tcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    |||||| |||||||||||||||| || || |||||||||||||| |||||||||    
T  34665058 tcaaaaacctaaagaatattttaaggggactaaaatcaaatgttagtatattta 34665005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 474
Target Start/End: Original strand, 17431139 - 17431191
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||| |||||| |||||||||||| || ||||||||||||||| ||||||||    
T  17431139 caaaagcctaaaaaatattttagggggactaaaatcaaatgttgatatattta 17431191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 28687626 - 28687713
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||||| | |||||||||||| |||||||||| |  | ||||||||||||||| ||||||||| || | | |||||||||||||    
T  28687626 aattttagagggaccaaaaccctaaaaaatattttagagtaactaaaatcaaatgttgatatatttaa-agaactatttacttatttaa 28687713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 476
Target Start/End: Original strand, 32186632 - 32186700
Alignment:
Q  409 aattttagag-gatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaag 476  Q
    |||||||||| || ||||| ||||||||||||||||| |  | |||||| |||||||||||||||||||    
T  32186632 aattttagagagaccaaaagcctaaagaatattttagaggaactaaaattaaatgttggtatatttaag 32186700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 496
Target Start/End: Original strand, 54164651 - 54164719
Alignment:
Q  428 cctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||||| |||||||||  |||| |||||||||||||||||||||||| |  || | |||||||||||||    
T  54164651 cctaaaaaatattttatagagactaaaatcaaatgttggtatatttagggagactatttacttatttaa 54164719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 474
Target Start/End: Complemental strand, 7513604 - 7513552
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||| |||||| ||||||||| ||  |||||||| |||||||||||||||||    
T  7513604 caaaagcctaaaaaatattttaaggtaattaaaattaaatgttggtatattta 7513552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 33752370 - 33752326
Alignment:
Q  431 aaagaatattttagggagattaaaatcaaatgttggtatatttaa 475  Q
    |||||||||||||||| || ||||||||||| ||| |||||||||    
T  33752370 aaagaatattttagggggactaaaatcaaatattgatatatttaa 33752326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 496
Target Start/End: Complemental strand, 54164557 - 54164469
Alignment:
Q  409 aattttaga-ggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||| ||| ||||| ||||||  |||||||| |  || ||||||||||||||||||||||||  | || | |||||||||||||    
T  54164557 aattttagatggaccaaaagcctaaaatatattttatgaggactaaaatcaaatgttggtatatttagaacgactatttacttatttaa 54164469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 6348 - 6292
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagag 478  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  6348 caaaaccctaaagaatattttagaaagattgaaatcaaatgttggtatatttaagag 6292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 409 - 496
Target Start/End: Complemental strand, 12821270 - 12821182
Alignment:
Q  409 aattttagaggatc-aaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||||||||||| | |||| |||||| |||||||||||| ||||||||||||| ||||||||||||||| |||   |||||||||||||    
T  12821270 aattttagaggaaccaaaagcctaaaaaatattttagggggattaaaatcaaacgttggtatatttaaggggaccatttacttatttaa 12821182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 7760685 - 7760611
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| ||||||||||||||||||| || |||||||| ||| |||||||||||  |||| | |||||||||||||    
T  7760685 caaaagcctaaagaatattttagggggactaaaatcatatgctggtatatttagaaggattatttacttatttaa 7760611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 9686450 - 9686538
Alignment:
Q  409 aattttaga-ggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||| ||| ||||| |||||| ||||||||| || || ||||||||||| ||| |||||||| ||||| | |||||||||||||    
T  9686450 aattttagaaggaccaaaagcctaaataatattttatggggactaaaatcaaatattgatatatttaggaggactatttacttatttaa 9686538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 19105419 - 19105507
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||||| | ||||| ||||||||||| |||| || || |||||||||| ||||||||||||| | ||| | |||||||||||||    
T  19105419 aattttagagggaccaaaagcctaaagaatagtttaaggggactaaaatcaaaagttggtatatttagggggactatttacttatttaa 19105507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 474
Target Start/End: Original strand, 20165016 - 20165072
Alignment:
Q  418 ggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||||||| ||||| ||||||||||| | || ||||||||||||||||||||||||    
T  20165016 ggatcaaaaacctaatgaatattttagagggactaaaatcaaatgttggtatattta 20165072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 31198463 - 31198550
Alignment:
Q  409 aattttagaggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||||||||||  ||||| |||||  |||||||||||   | |||||||||||||||||||||||||  ||| | |||||||||||||    
T  31198463 aattttagagggccaaaagcctaagaaatattttaggagaactaaaatcaaatgttggtatatttaaagggactatttacttatttaa 31198550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 496
Target Start/End: Original strand, 31172354 - 31172428
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| |||||| |||||||||||  ||||||||||||||||| ||||||||||  |||   |||||||||||||    
T  31172354 caaaaacctaaaaaatattttaggaggattaaaatcaaatgtttgtatatttaaagggatcatttacttatttaa 31172428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 474
Target Start/End: Complemental strand, 3555429 - 3555390
Alignment:
Q  435 aatattttagggagattaaaatcaaatgttggtatattta 474  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  3555429 aatattttagggggactaaaatcaaatgttggtatattta 3555390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 19105332 - 19105259
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| ||||||||||||||||| | || ||||||| |||||| ||||||||| | |||  ||||||||||||||    
T  19105332 caaaagcctaaagaatattttagag-gactaaaatcgaatgttagtatatttatgcggatcttttacttatttaa 19105259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 31198389 - 31198323
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||||||||| ||||| | |||||| ||||||||||   || ||||||||||||||||||||||||    
T  31198389 aattttagagggatcaataacctaaaaaatattttagaaggactaaaatcaaatgttggtatattta 31198323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 496
Target Start/End: Complemental strand, 29635325 - 29635238
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||||| | |||||  |||| ||||||||||||| || ||||||||||||||| |||||||| | |||   |||||||||||||    
T  29635325 aattttagagggaccaaaagtctaaggaatattttaggg-gactaaaatcaaatgttgatatatttagggggaccatttacttatttaa 29635238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 417 - 496
Target Start/End: Complemental strand, 33892118 - 33892039
Alignment:
Q  417 aggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||| ||||| |||||||||||||||  || || |||||||||||||||||||||||||||| | | |||||||||||||    
T  33892118 aggaccaaaaacctaaagaatattttgaggggactaaaatcaaatgttggtatatttaagagaactatttacttatttaa 33892039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 31212390 - 31212316
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| |||||||||||||||| || || ||||||||||||||| |||||||||| ||| | |||||||||||||    
T  31212390 caaaagcctaaagaatattttatggggactaaaatcaaatgttgatatatttaaggggactatttacttatttaa 31212316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 409 - 496
Target Start/End: Complemental strand, 9861659 - 9861571
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||||| | ||||| ||||||||||||||||  | || ||||||||||||||| |||||||| ||||| | |||||||||||||    
T  9861659 aattttagagggaccaaaagcctaaagaatattttatagggactaaaatcaaatgttgatatatttaggaggactatttacttatttaa 9861571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 31212449 - 31212537
Alignment:
Q  409 aattttagaggat-caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||||||  ||||| |||||||||||||||| || || |||||||||||||||||||||||| |  || | |||||||||||||    
T  31212449 aattttagaggaaacaaaaacctaaagaatattttatggggactaaaatcaaatgttggtatatttagggagactatttacttatttaa 31212537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 33892201 - 33892289
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||||| | ||||| | ||||||||||||||  | || ||||||||||||||||||||||||||| || | |||||||||||||    
T  33892201 aattttagagggaccaaaaacataaagaatattttaaagggactaaaatcaaatgttggtatatttaagaagattgtttacttatttaa 33892289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 418 - 496
Target Start/End: Original strand, 6906448 - 6906526
Alignment:
Q  418 ggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||| |||||| ||||||||| || || |||||||||||||||||||||||| | |||   |||||||||||||    
T  6906448 ggatcaaaagcctaaaaaatattttatggggactaaaatcaaatgttggtatatttagggggaccgtttacttatttaa 6906526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 409 - 475
Target Start/End: Original strand, 14148851 - 14148917
Alignment:
Q  409 aattttagaggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaa 475  Q
    |||||| ||||| ||||| |||||| ||||| |||||| || |||||||||||||||||||||||||    
T  14148851 aattttggaggaccaaaagcctaaaaaatatgttagggggactaaaatcaaatgttggtatatttaa 14148917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 496
Target Start/End: Original strand, 8791882 - 8791960
Alignment:
Q  418 ggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||| |||| |||||  ||||||||| |  ||||||||||||||||| ||||||||||||| | | |||||||||||||    
T  8791882 ggataaaaaacctaagaaatattttatgaggattaaaatcaaatgttagtatatttaagagaactatttacttatttaa 8791960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 496
Target Start/End: Complemental strand, 15229707 - 15229619
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||||| |||||||  | |||||||||||||  | || |||||| ||||||||||||||||||| | | | |||||||||||||    
T  15229707 aattttagagggatcaaaagtcaaaagaatattttatagggactaaaataaaatgttggtatatttaagggaactatttacttatttaa 15229619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 496
Target Start/End: Complemental strand, 6906345 - 6906267
Alignment:
Q  417 aggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||| ||||| ||||| |||||||||| || || |||| ||||||||||||||||||| | ||| | |||||||||||||    
T  6906345 aggaccaaaagcctaaggaatattttatggggactaaa-tcaaatgttggtatatttagggggactatttacttatttaa 6906267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 476
Target Start/End: Complemental strand, 20691343 - 20691296
Alignment:
Q  429 ctaaagaatattttagggagattaaaatcaaatgttggtatatttaag 476  Q
    |||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  20691343 ctaaggaatattttagggggaataaaatcaaattttggtatatttaag 20691296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 10069942 - 10069876
Alignment:
Q  409 aattttaga-ggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||||||| ||| ||||| ||||||||||||||||| | | ||||||| ||||||||||| |||||    
T  10069942 aattttagaaggaccaaaatcctaaagaatattttagaggggttaaaattaaatgttggtacattta 10069876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 10070024 - 10070090
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||||||||| | ||||| |||||| |||||||||||  ||||||||| |||| ||||||||||||    
T  10070024 aattttagagggaccaaaaacctaaaaaatattttaggaggattaaaataaaatattggtatattta 10070090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 422 - 496
Target Start/End: Original strand, 25906136 - 25906210
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| |||||||||||||| |||| || ||||||||||||||| |||||||| ||||| | |||||||||||||    
T  25906136 caaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggaggattatttacttatttaa 25906210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 411 - 477
Target Start/End: Original strand, 5161070 - 5161135
Alignment:
Q  411 ttttagaggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaaga 477  Q
    |||||||||||||||| |||||| |||||||||||| || ||||||||||||||  |||||||||||    
T  5161070 ttttagaggatcaaaaacctaaataatattttaggg-gagtaaaatcaaatgttaatatatttaaga 5161135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 474
Target Start/End: Complemental strand, 12272584 - 12272527
Alignment:
Q  417 aggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    |||||||||| |||||| | |||||||| |||| ||||||||||||||||||||||||    
T  12272584 aggatcaaaaacctaaaaattattttagagagactaaaatcaaatgttggtatattta 12272527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 496
Target Start/End: Original strand, 13657728 - 13657802
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| || ||| ||||||||||| | | |||||||||||||| |||||||| |||||| | |||||||||||||    
T  13657728 caaaagccaaaataatattttaggaaaactaaaatcaaatgttagtatatttcagaggactatttacttatttaa 13657802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 29673367 - 29673294
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| |||||| |||||||||||  || |||||||||||||||||||||||||| |||   |||||||||||||    
T  29673367 caaaatcctaaa-aatattttaggaggactaaaatcaaatgttggtatatttaaggggaccatttacttatttaa 29673294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 496
Target Start/End: Original strand, 20510470 - 20510548
Alignment:
Q  418 ggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||| |||||| |||||||||  | || ||||||||||||||  |||||||| ||||| | ||||||| |||||    
T  20510470 ggatcaaaagcctaaaaaatattttaatgggactaaaatcaaatgtttatatatttatgaggactatttacttttttaa 20510548  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 22297839 - 22297765
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| |||||| |||||||||| | || ||||||||||||||| ||||||||   ||| | |||||||||||||    
T  22297839 caaaaacctaaaaaatattttagagggactaaaatcaaatgttgatatatttagagggactatttacttatttaa 22297765  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 496
Target Start/End: Complemental strand, 25906022 - 25905961
Alignment:
Q  435 aatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    |||| ||||||| || ||||||||||||||||||||| |||| |||   |||||||||||||    
T  25906022 aatactttagggggactaaaatcaaatgttggtatatataaggggatcatttacttatttaa 25905961  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 22297927 - 22298015
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||||| | ||||| | |||| ||||||||| || || |||||||||||||| ||||||||| | |||   |||||||||||||    
T  22297927 aattttagagggaccaaaaacttaaaaaatattttaaggggactaaaatcaaatgttagtatatttagggggaccatttacttatttaa 22298015  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 472
Target Start/End: Complemental strand, 24490756 - 24490720
Alignment:
Q  436 atattttagggagattaaaatcaaatgttggtatatt 472  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  24490756 atattttagagagactaaaatcaaatgttggtatatt 24490720  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 7359585 - 7359650
Alignment:
Q  409 aattttagaggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    |||||| | ||||||||| |||||| |||||||||||| || ||||||||||||||||||||||||    
T  7359585 aattttgggggatcaaaagcctaaataatattttagggggagtaaaatcaaatgttggtatattta 7359650  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 13340520 - 13340446
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| |||||||||| |||||  | || |||||||||||||||||||||||||| ||| | |||||||||||||    
T  13340520 caaaagcctaaagaatgttttatagggactaaaatcaaatgttggtatatttaaggggactatttacttatttaa 13340446  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 496
Target Start/End: Complemental strand, 12290061 - 12289983
Alignment:
Q  418 ggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||| ||||  |||||||||||| ||  |||||||||||||||||||||||| |  || | |||||||||||||    
T  12290061 ggatcaaaaacctagggaatattttaggcaggctaaaatcaaatgttggtatatttagggagactatttacttatttaa 12289983  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 476
Target Start/End: Original strand, 13340622 - 13340676
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaag 476  Q
    ||||| |||||||||||||||| || || |||||||||||||| |||||||||||    
T  13340622 caaaaacctaaagaatattttatggggactaaaatcaaatgttagtatatttaag 13340676  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 24704398 - 24704332
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||||||||| | ||||| | |||| ||||||||||||||| ||||||||||| ||||||||||||    
T  24704398 aattttagagggaccaaaagcataaataatattttagggagactaaaatcaaatattggtatattta 24704332  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 30519771 - 30519705
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatattta 474  Q
    ||||||||||| | ||||| | |||| |||||||||  |||||||||||||||||||||||||||||    
T  30519771 aattttagagggaccaaaaacttaaataatattttaaagagattaaaatcaaatgttggtatattta 30519705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 496
Target Start/End: Original strand, 31298903 - 31298977
Alignment:
Q  422 caaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||| ||||||||||||||||| |  | ||||||||||| |||||||||||||  ||| | |||||||||||||    
T  31298903 caaaagcctaaagaatattttagaggaactaaaatcaaatattggtatatttaaagggactatttacttatttaa 31298977  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 496
Target Start/End: Complemental strand, 34637491 - 34637428
Alignment:
Q  432 aagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||||||||| || |||||||||||||||||||||||| |  || | |||||||||||||    
T  34637491 aagaatattttaggg-gactaaaatcaaatgttggtatatttatggagactatttacttatttaa 34637428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 496
Target Start/End: Original strand, 34637589 - 34637677
Alignment:
Q  409 aattttagagg-atcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaagaggaatttttacttatttaa 496  Q
    ||||||||||| | ||||| ||| |||||||||||||||  | ||||||||||||||| |||||||| |  || | |||||||||||||    
T  34637589 aattttagagggaccaaaaacctcaagaatattttaggggaactaaaatcaaatgttgatatatttagggtgactatttacttatttaa 34637677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 464
Target Start/End: Original strand, 10284387 - 10284423
Alignment:
Q  428 cctaaagaatattttagggagattaaaatcaaatgtt 464  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  10284387 cctatagaatattttaaggagattaaaatcaaatgtt 10284423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 476
Target Start/End: Original strand, 30725 - 30790
Alignment:
Q  411 ttttagaggatcaaaaccctaaagaatattttagggagattaaaatcaaatgttggtatatttaag 476  Q
    |||||||||| ||||| | |||| ||||||||  ||||| ||||||||||||||  ||||||||||    
T  30725 ttttagaggaccaaaaacttaaataatatttttaggagactaaaatcaaatgttattatatttaag 30790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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