View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13714_low_8 (Length: 455)
Name: NF13714_low_8
Description: NF13714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13714_low_8 |
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| [»] scaffold0232 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 42215980 - 42216280
Alignment:
| Q |
14 |
gaaatatatgagggatagtatgggattgggaaatgtaaacatgcctttatggctgtatataagaattttaaatttaatcgcttttggtttggtttggttt |
113 |
Q |
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| T |
42215980 |
gaaatatatgagggatagtatgggattgggaaatgtaaacatgcctttatggatgtatataagaattttaaatttaatcgcttttggtttggtttggttt |
42216079 |
T |
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| Q |
114 |
ttaaaccatgcacatccctgcttaggatatgaattcaaagccacaatctctcacttgtgagcaatatgactttagttgatagagtttttcaaaaagaaat |
213 |
Q |
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| T |
42216080 |
ttaaaccatgcacatccctgcttaggatatgaattcaaagccacaatctctcacttgtgagcaatatgactttagttgatagagtttttcaaaaagaaat |
42216179 |
T |
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| Q |
214 |
aaaagagaaataatttttctataaccaccaattgatatctttttacaacaatttaactctaagtgcaaataaatcgtgtggttaactatgttaaatatat |
313 |
Q |
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| T |
42216180 |
aaaagagaaatgatttttctataaccaccaattgatatctttttacaacaatttaactctaagtgcaaataaatcgtgtggttaactatgttaaatatat |
42216279 |
T |
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| Q |
314 |
t |
314 |
Q |
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| T |
42216280 |
t |
42216280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 311 - 440
Target Start/End: Original strand, 42216314 - 42216443
Alignment:
| Q |
311 |
tattgttaatggatattggacatcgaaactcattaatcactggcataatttcattatccacgaaattaaacatgattaaccatatttaagacacttagtg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42216314 |
tattgttaatggatattggacatcgaaactcattaatcactggcataatttcattatccacgaaattaaacatgattaaccatatttaagacacttagtg |
42216413 |
T |
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| Q |
411 |
tgagccaatagcaagtatgtgagtgagatc |
440 |
Q |
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| T |
42216414 |
tgagccaatagcaagtatgtgagtgagatc |
42216443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 132
Target Start/End: Original strand, 35126978 - 35127009
Alignment:
| Q |
101 |
tttggtttggtttttaaaccatgcacatccct |
132 |
Q |
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| T |
35126978 |
tttggtttggtttttaaaccatgcacatccct |
35127009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0232
Description:
Target: scaffold0232; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 21454 - 21418
Alignment:
| Q |
96 |
tttggtttggtttggtttttaaaccatgcacatccct |
132 |
Q |
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| T |
21454 |
tttggtttggtttggtttatgaaccatgcacatccct |
21418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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