View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13715_high_1 (Length: 1043)
Name: NF13715_high_1
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_high_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 943; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 943; E-Value: 0
Query Start/End: Original strand, 1 - 979
Target Start/End: Original strand, 34770782 - 34771760
Alignment:
| Q |
1 |
tgctgaacaaaacagaaatagaataagcaagatgataatgacaactgtggagaataacgtaggtaaggcctgtcgagaaaagaacacactactttttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
34770782 |
tgctgaacaaaacagaaatagaataagcaagatgataatgacaactgtggagaataacgtaggtgaggcctgtcgagaaaagaacacactactttttcaa |
34770881 |
T |
|
| Q |
101 |
ataaaagatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagtatatgatggaatgcattct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34770882 |
ataaaagatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagtatatgatggaatgcattct |
34770981 |
T |
|
| Q |
201 |
actatataatccattttattccattcaatttttacaaaatcctaacttatcaataactactgtgatcttatctataataacaataataaaaagagctaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34770982 |
actatataatccattttattccattcaatttttacaaaatcctaacttatcaataactactgtgatcttatctataataacaataataaaaagagctaac |
34771081 |
T |
|
| Q |
301 |
gaagtttgaatcaattgataaaaaataactaaaaattcaactactattgccaacgaaaatacatctttagagagtctcagaagtaactctaattctatta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34771082 |
gaagtttgaatcaattgataaaaaataactaaaaattcaactactattgccaacgaaaatacatctttagagagtctcagaagtaactctaattctatta |
34771181 |
T |
|
| Q |
401 |
agttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattggctatttctttttaataaagtagcattcattcattatttatttacttt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34771182 |
agttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattggctatttctttttaataaagtagcattcattcattatttatttacttt |
34771281 |
T |
|
| Q |
501 |
tgtttctctaataccattagaaaatgaaagagagagaatctcgcttcctacttctatctagttttcgtgtctctaattgatctttaccacaacaaaacca |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34771282 |
tgtttctctaataccattagaaaatgaaagaaagagaatctcgcttcctacttctctctagttttcgtgtctctaattgatctttaccacaacaaaacca |
34771381 |
T |
|
| Q |
601 |
agccatgtaaaggttagtttcatgtcaccatgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttactgttacttccctctcta |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34771382 |
agccatgtaaaggttagtttcatgtcaccatgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttactgttacttccctctcta |
34771481 |
T |
|
| Q |
701 |
tattgttacttcaacacacacacattcatatgcatattcacattcacactcttctgttttttgcttttgaactcttcaacttctaagaaaaatgtctaat |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34771482 |
tattgttacttcaacacacacacattcatatgcatattcacattcacactcttctgttttttgcttttgaactcttcaacttctaagaaaaatgtctaat |
34771581 |
T |
|
| Q |
801 |
atttgggatggttgttacctatttattattttcatcttcaatcaattcttacatttcattgttgatgnnnnnnnngttggaatgtgtttagatttcatga |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
34771582 |
atttgggatggttgttacctatttattattttcatcttcaatcaattcttacatttcattgttgatgttttttttgttggaatgtgtttagatttcatga |
34771681 |
T |
|
| Q |
901 |
tcatgttcatgttcatcatgttcatttcaaccatgctacatgttacattacatctttccaaacttgatagacttttacc |
979 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34771682 |
tcatgttcatgttcatcatgttcatttcaaccatgctacatgttacattacatctttccaaacttgatagacttttacc |
34771760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 34781161 - 34781365
Alignment:
| Q |
34 |
gataatgacaactgtggagaa---taacgtaggtaaggcctgtcgagaaaagaacacactactttttcaaataaaa-gatcagggataaaatagtaatta |
129 |
Q |
| |
|
||||||||||||||||||||| ||||||| | | ||||||||||||||| ||||||||||| ||||||||||| ||| || ||||||||||||||| |
|
|
| T |
34781161 |
gataatgacaactgtggagaagaataacgtaaatgaagcctgtcgagaaaaggacacactacttgttcaaataaaaagattagagataaaatagtaattt |
34781260 |
T |
|
| Q |
130 |
caaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagtatatgatggaatgcattctactatataatccattttattccattcaat |
229 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||||||||||||| ||||| |||| |||||||| || |||| ||||||||||||||||||||| |
|
|
| T |
34781261 |
taaaattaagatgtttcat--ggaggaaagaaaaataataagagatgatggtatacgatgaaatgcattatattata--atccattttattccattcaat |
34781356 |
T |
|
| Q |
230 |
ttttacaaa |
238 |
Q |
| |
|
||||||||| |
|
|
| T |
34781357 |
ttttacaaa |
34781365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 34795615 - 34795721
Alignment:
| Q |
523 |
aatgaaagagagagaatctcgcttcctacttctatctagttttcgtgtctctaattgatctttaccacaacaaaaccaagccatgtaaaggttagtttca |
622 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34795615 |
aatgaaagaaagagaatctcacttcctacttccctctagtactcgtctctctaattgatctttaccacaacaaaaccaaaccatgtaaaggttagtttca |
34795714 |
T |
|
| Q |
623 |
tgtcacc |
629 |
Q |
| |
|
||||||| |
|
|
| T |
34795715 |
tgtcacc |
34795721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 34780767 - 34780873
Alignment:
| Q |
523 |
aatgaaagagagagaatctcgcttcctacttctatctagttttcgtgtctctaattgatctttaccacaacaaaaccaagccatgtaaaggttagtttca |
622 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| | |||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34780767 |
aatgaaagaaagagaatctcacttcctacttccctttagtactcgtctctctaattgatctttaccacaacaaaaccaaaccatgtaaaggttagtttca |
34780866 |
T |
|
| Q |
623 |
tgtcacc |
629 |
Q |
| |
|
||||||| |
|
|
| T |
34780867 |
tgtcacc |
34780873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 11549487 - 11549556
Alignment:
| Q |
73 |
tcgagaaaagaacacactactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatg |
142 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11549487 |
tcgagaaaaggacacactactttttcaaataaaagatcagggatagaatagtaattacaaaattaagatg |
11549556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 734 - 811
Target Start/End: Original strand, 34781083 - 34781161
Alignment:
| Q |
734 |
atattcacattcacactcttctgtttt-ttgcttttgaactcttcaacttctaagaaaaatgtctaatatttgggatgg |
811 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
34781083 |
atattcacatttacattcttctgtttttttgcttttgaactcttcaacttctgataaaaatgtctaatatttgggatgg |
34781161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 630 - 684
Target Start/End: Original strand, 34780904 - 34780958
Alignment:
| Q |
630 |
atgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttact |
684 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34780904 |
atgtttcttaaaaatccatttatatctatttttgcatgatcctctttttcttact |
34780958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 630 - 684
Target Start/End: Original strand, 34795752 - 34795806
Alignment:
| Q |
630 |
atgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttact |
684 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34795752 |
atgtttcttaaaaatccatttatatctatttttgcatgatcctctttttcttact |
34795806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 34795285 - 34795353
Alignment:
| Q |
274 |
ataataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaact |
342 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
34795285 |
ataataacaataataaatagagccaacgaagtttgactcaattgataaaaaataacaaaaaatttaact |
34795353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 11549443 - 11549485
Alignment:
| Q |
4 |
tgaacaaaacagaaatagaataagcaagatgataatgacaact |
46 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11549443 |
tgaacaaaacagaaatagaataagcaagatgataatgacaact |
11549485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 34780505 - 34780570
Alignment:
| Q |
276 |
aataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaact |
342 |
Q |
| |
|
|||||||| |||||||||| || ||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
34780505 |
aataacaaaaataaaaagaatta-cgaagttcgactcaattgataaaaaataactaaaaattcaact |
34780570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 358 - 452
Target Start/End: Original strand, 34795418 - 34795512
Alignment:
| Q |
358 |
aatacatctttagagagtctcagaagtaactctaattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattg |
452 |
Q |
| |
|
||||| ||||||||||| || | ||| |||||| || ||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
34795418 |
aatacctctttagagagactataaggtagctctaactcaattaagttgcgaaatccgactcatttaaacttttttgtgccaaataagtagcattg |
34795512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 716 - 748
Target Start/End: Original strand, 34795968 - 34796000
Alignment:
| Q |
716 |
acacacacattcatatgcatattcacattcaca |
748 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
34795968 |
acacacacattcatatgcatattcacattcaca |
34796000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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