View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_high_10 (Length: 496)
Name: NF13715_high_10
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 10 - 480
Target Start/End: Original strand, 856682 - 857152
Alignment:
| Q |
10 |
cagagaaacagtatgaattatcattatcataagaaacaagcaaagactcaattccattgacaggtgagaattacattcaaaactgaaaactagatttagt |
109 |
Q |
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| T |
856682 |
cagagaaacagtatgaattatcattatcataagaaacaagcaaagactcaattccattgacaggtgagaattacattcaaaactgaaaactagatttagt |
856781 |
T |
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| Q |
110 |
cattggctgtggctagctgcatcgaaagcagctcatcctctgggataaccctaatatgacaatcagaacgaggataagaggcacacaagagtgcataacc |
209 |
Q |
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| T |
856782 |
cattggctgtggctagctgcatcgaaagcagctcatcctctgggataaccctaatatgacaatcagaacgaggataagaggcacacaagagtgcataacc |
856881 |
T |
|
| Q |
210 |
acgctccacaacatcatcactgagcattccatcactctgatcaactgtgccgctgataagacgagcaggacaagtcatgcaaactccaagcttgcagtca |
309 |
Q |
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| T |
856882 |
acgctccacaacatcatcactgagcataccatcactctgatcaactgtgccgctgataagacgagcaggacaagtcatgcaaactccaagcttgcagtca |
856981 |
T |
|
| Q |
310 |
tgaggcacatccaaaccagaatccaatgcctttgataatatggtttcatcaggttcaacttcaagctgtgtagtcttgccctcatgttcaatcactactt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
856982 |
tgaggcacatccaaaccagaatccaatgcctttgataatatggtttcatcaggttcaacttcaagctgtgtagtcttgccctcatgttcaatcactactt |
857081 |
T |
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| Q |
410 |
tataagaagatcttacagtgaatgtgagtgatggtgatgatgggtgtgaacctgaaccaaggcgtggtctt |
480 |
Q |
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| T |
857082 |
tataagaagatcttacagtgaaagtgagtgatggtgatgatgggtgtgaacctgaaccaaggcgtggtctt |
857152 |
T |
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