View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13715_high_11 (Length: 438)

Name: NF13715_high_11
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13715_high_11
NF13715_high_11
[»] chr3 (17 HSPs)
chr3 (79-427)||(49987188-49987537)
chr3 (125-329)||(16772825-16773037)
chr3 (84-177)||(16772754-16772847)
chr3 (84-196)||(54886833-54886947)
chr3 (155-284)||(44260822-44260951)
chr3 (119-177)||(54994710-54994770)
chr3 (119-183)||(8638950-8639016)
chr3 (119-177)||(2386352-2386412)
chr3 (119-177)||(7197817-7197877)
chr3 (119-177)||(45826204-45826264)
chr3 (119-177)||(51274487-51274547)
chr3 (143-178)||(8728640-8728675)
chr3 (143-178)||(9080527-9080562)
chr3 (119-176)||(40976891-40976950)
chr3 (119-164)||(42510643-42510689)
chr3 (119-177)||(592602-592662)
chr3 (119-177)||(48637590-48637650)
[»] chr2 (8 HSPs)
chr2 (103-329)||(24060330-24060556)
chr2 (88-325)||(20936451-20936688)
chr2 (117-221)||(42599696-42599799)
chr2 (119-177)||(33789980-33790040)
chr2 (119-177)||(12324954-12325014)
chr2 (116-178)||(13218740-13218803)
chr2 (118-183)||(27659373-27659439)
chr2 (88-153)||(12301251-12301316)
[»] chr8 (8 HSPs)
chr8 (84-178)||(38198617-38198711)
chr8 (117-221)||(29857463-29857567)
chr8 (106-221)||(40993705-40993821)
chr8 (119-183)||(5176599-5176664)
chr8 (120-177)||(43506411-43506469)
chr8 (119-178)||(21661181-21661242)
chr8 (119-177)||(40254505-40254564)
chr8 (116-149)||(23990472-23990505)
[»] chr4 (6 HSPs)
chr4 (84-231)||(34522999-34523148)
chr4 (119-178)||(32992386-32992446)
chr4 (139-178)||(15739272-15739311)
chr4 (139-178)||(52177032-52177071)
chr4 (118-163)||(175458-175502)
chr4 (145-178)||(22072521-22072554)
[»] chr6 (6 HSPs)
chr6 (103-190)||(14345017-14345104)
chr6 (119-177)||(18133040-18133100)
chr6 (119-177)||(21535809-21535869)
chr6 (119-177)||(4303041-4303101)
chr6 (119-177)||(18131834-18131894)
chr6 (119-177)||(21395643-21395703)
[»] chr1 (9 HSPs)
chr1 (99-151)||(10045997-10046049)
chr1 (119-177)||(8089771-8089831)
chr1 (119-177)||(10582801-10582861)
chr1 (119-177)||(10584007-10584067)
chr1 (119-177)||(49122229-49122289)
chr1 (119-178)||(30038110-30038171)
chr1 (123-177)||(3815223-3815279)
chr1 (119-177)||(8788585-8788645)
chr1 (119-177)||(36346592-36346652)
[»] chr7 (8 HSPs)
chr7 (99-205)||(30640695-30640802)
chr7 (119-184)||(17901153-17901220)
chr7 (118-183)||(15039586-15039652)
chr7 (118-151)||(7175745-7175778)
chr7 (125-174)||(47746140-47746189)
chr7 (119-177)||(6081302-6081362)
chr7 (119-177)||(6082509-6082569)
chr7 (116-176)||(6398623-6398683)
[»] chr5 (11 HSPs)
chr5 (118-182)||(24150269-24150334)
chr5 (119-175)||(19139374-19139432)
chr5 (119-177)||(22950364-22950424)
chr5 (119-177)||(29526090-29526150)
chr5 (119-177)||(39701640-39701700)
chr5 (119-177)||(39702870-39702930)
chr5 (116-178)||(1886087-1886150)
chr5 (119-177)||(29527303-29527364)
chr5 (121-177)||(35144554-35144612)
chr5 (119-177)||(19934657-19934717)
chr5 (122-177)||(37473632-37473688)
[»] scaffold0026 (2 HSPs)
scaffold0026 (119-176)||(79623-79682)
scaffold0026 (119-177)||(80818-80878)
[»] scaffold0018 (1 HSPs)
scaffold0018 (119-177)||(177915-177975)
[»] scaffold0011 (2 HSPs)
scaffold0011 (119-177)||(205641-205701)
scaffold0011 (119-177)||(211718-211778)
[»] scaffold0063 (1 HSPs)
scaffold0063 (141-178)||(33902-33939)
[»] scaffold0227 (1 HSPs)
scaffold0227 (119-177)||(11177-11237)


Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 79 - 427
Target Start/End: Original strand, 49987188 - 49987537
Alignment:
Q  79 aagggaaactaaggatagatatattatacacaattaatatccaagaaattcgagagtcttggtctctccctccaagaattagagagtttggtctctccca 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49987188 aagggaaactaaggatagatatattatacacaattaatatccaagaaattcgagagtcttggtctctccctccaagaattagagagtttggtctctccca 49987287  T
Q  179 cccaaaaccatttagaaaa-tatcccatcatcacttcctccttttctatctatatttattcaaaaatagaaaacacataacccataactgctatacataa 277  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49987288 cccaaaaccatttagaaaaatatcccatcatcacttcctccttttctatctatatttattcaaaaatagaaaacacataacccataactgctatacataa 49987387  T
Q  278 ctgacacataaaaacacaactgcccataaccgccatcataagaagtctaacatctcgacgtttgtcttggtgcttttaaaggtgccaatcatactcactg 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49987388 ctgacacataaaaacacaactgcccataaccgccatcataagaagtctaacatctcgatgtttgtcttggtgcttttaaaggtgccaatcatactcactg 49987487  T
Q  378 acgggtctatagataaagtaatcaccaatgctgtgttttctcacattcat 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49987488 acgggtctatagataaagtaatcaccaatgctgtgttttctcacattcat 49987537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 125 - 329
Target Start/End: Original strand, 16772825 - 16773037
Alignment:
Q  125 aattcgagagtcttggtctctccctccaagaattagagagtttggtctctccca-------cccaaaa---ccatttagaaaatatcccatcatcacttc 214  Q
    |||||||||| |||||||| |||||||||||||||||||| |||||||||||||       |||| ||   ||||| ||||| |||||||| |||||||     
T  16772825 aattcgagag-cttggtctttccctccaagaattagagagcttggtctctcccaagtcccacccataataaccattcagaaa-tatcccataatcacttt 16772922  T
Q  215 ctccttttctatctatatttattcaaaaatagaaa-acacataacccataactgctatacataactgacacataaaaacacaactgcccataaccgccat 313  Q
    |||||||||||||||||||||||| |||  ||||| ||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||    
T  16772923 ctccttttctatctatatttattctaaac-agaaacacacataacccataactgctaaacataactgacacataaaagcaaaactgcccataaccgccat 16773021  T
Q  314 cataagaagtctaaca 329  Q
    ||||||||||||||||    
T  16773022 cataagaagtctaaca 16773037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 16772754 - 16772847
Alignment:
Q  84 aaactaaggatagatatattatacacaattaatatccaagaaattcgagagtcttggtctctccctccaagaattagagagtttggtctctccc 177  Q
    |||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||    
T  16772754 aaactacggatagaaatattatacacaattattattcaagaaattcgagagtcttggtctctctctccaagaattcgagagcttggtctttccc 16772847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 54886833 - 54886947
Alignment:
Q  84 aaactaaggataga--tatattatacacaattaatatccaagaaattcgagagtcttggtctctccctccaagaattagagagtttggtctctcccaccc 181  Q
    ||||||||||||||  ||||||||||||| ||| |||| || ||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||| ||||    
T  54886833 aaactaaggatagagatatattatacacagttactatctaaaaaattcgagagtcttggtcactcgctccaagaattcgagagcttggtctctccaaccc 54886932  T
Q  182 aaaaccatttagaaa 196  Q
    | ||||||| |||||    
T  54886933 ataaccattcagaaa 54886947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 155 - 284
Target Start/End: Original strand, 44260822 - 44260951
Alignment:
Q  155 aattagagagtttggtctctcccacccaaaaccatttagaaaatatcccatcatcacttcctccttttctatctatatttattcaaaaatagaaa-acac 253  Q
    |||| ||||| |||||||||||| |||||||||||| | ||| |||||||| ||||  | |||||||  | ||||||||||||| |||| ||||| ||||    
T  44260822 aattcgagagcttggtctctccctcccaaaaccattca-aaactatcccataatcatgttctcctttcttttctatatttattctaaaacagaaacacac 44260920  T
Q  254 ataacccataactgctatacataactgacac 284  Q
    ||||||||||| |||||||||||||||||||    
T  44260921 ataacccataattgctatacataactgacac 44260951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 54994770 - 54994710
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||    
T  54994770 ccaagaaattcgagagtcttggttctctcccctccaagaattcgagagcttggtctctccc 54994710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 8639016 - 8638950
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctctccct-ccaagaattagagagtttggtctctcccacccaa 183  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||    
T  8639016 ccaagaatttcgagagtcttgggtctctcccttccaagaattagagagcttgttctctcccaaccaa 8638950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 2386352 - 2386412
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    ||||||||||||||||||| ||| ||||||| |||||||||| ||||| ||||||||||||    
T  2386352 ccaagaaattcgagagtctcggttctctcccctccaagaattcgagagcttggtctctccc 2386412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 7197877 - 7197817
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||    
T  7197877 ccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 7197817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 45826204 - 45826264
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    |||||||||| |||||||||||| ||||||| |||||||||| ||||| ||||||||||||    
T  45826204 ccaagaaattagagagtcttggttctctcccctccaagaattcgagagcttggtctctccc 45826264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 51274547 - 51274487
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    ||||||||||||||||||||||| ||| ||| |||||||||| ||||| ||||||||||||    
T  51274547 ccaagaaattcgagagtcttggttctcccccctccaagaatttgagagcttggtctctccc 51274487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 178
Target Start/End: Complemental strand, 8728675 - 8728640
Alignment:
Q  143 tctccctccaagaattagagagtttggtctctccca 178  Q
    |||||||||||||||| |||||||||||||||||||    
T  8728675 tctccctccaagaattcgagagtttggtctctccca 8728640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 178
Target Start/End: Complemental strand, 9080562 - 9080527
Alignment:
Q  143 tctccctccaagaattagagagtttggtctctccca 178  Q
    |||||||||||||||| |||||||||||||||||||    
T  9080562 tctccctccaagaattcgagagtttggtctctccca 9080527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 40976950 - 40976891
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctcc 176  Q
    |||| |||||||||||||||||| ||||||| |||||||||| ||||| |||||||||||    
T  40976950 ccaaaaaattcgagagtcttggttctctcccctccaagaattcgagagcttggtctctcc 40976891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 42510689 - 42510643
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctctccctccaagaattagagag 164  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||||    
T  42510689 ccaaggaattcgagagtcttgggtctctccctccaagaattcgagag 42510643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 592662 - 592602
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||| |||||||| ||||||| |||||||||| ||||| |||| |||||||    
T  592662 ccaagaaattcgagggtcttggttctctcccctccaagaattcgagagcttgggctctccc 592602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 48637590 - 48637650
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    |||||||||| |||||||||||| ||||||| |||||| ||| ||||| ||||||||||||    
T  48637590 ccaagaaatttgagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 48637650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 103 - 329
Target Start/End: Complemental strand, 24060556 - 24060330
Alignment:
Q  103 tatacacaattaatatccaagaaattcgagagtcttggtctctccctccaagaattagagagtttggtctctcccacccaaaaccatttagaaaatatcc 202  Q
    |||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||| |||||||||||| |||| ||| | | |||||| ||||    
T  24060556 tatacacaattactatccaagaaattcgagagtcttcgcctctccatccaagaattagagagcttggtctctccctcccataacaaatcagaaaa-atcc 24060458  T
Q  203 catcatcacttcctccttttctatctatatttattcaaaaatagaaa-acacataacccataactgctatacataactgacac---ataaaaacacaact 298  Q
    ||| ||||||| ||||||| || ||  ||||||||| |||| ||||| |||||||||||||||||||||||| ||| ||||||   ||||||||  ||||    
T  24060457 cataatcactttctcctttcctgtc--tatttattctaaaacagaaacacacataacccataactgctatac-taattgacacataataaaaacctaact 24060361  T
Q  299 gcccataaccgccatcataagaagtctaaca 329  Q
     |||||||||||| |||||||||||||||||    
T  24060360 tcccataaccgccgtcataagaagtctaaca 24060330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 88 - 325
Target Start/End: Complemental strand, 20936688 - 20936451
Alignment:
Q  88 taaggatagatatattatacacaattaatatccaagaaattcgagagtcttggtctctccctccaagaattagagagtttggtctctcccacccaaaacc 187  Q
    |||||| ||| |||||||||||||||| |||||||||||||| |||||||  |||||||||| |||||||| ||||| ||||||| | || | |||||||    
T  20936688 taaggaaagagatattatacacaattactatccaagaaattcaagagtct--gtctctcccttcaagaattcgagagcttggtctttacctctcaaaacc 20936591  T
Q  188 atttagaaaatatcccatcatcacttcctccttttctatctatatttattcaaaaatagaaaacacataacccataactgctatacataactgacac--- 284  Q
    ||| | ||| |||||||| || | || || |||| || ||||||||| ||| |||| || ||||||| ||||||||||| |||||||||||||||||       
T  20936590 attcaaaaactatcccatgataattttcttctttcctttctatattttttctaaaacag-aaacacacaacccataacttctatacataactgacacata 20936492  T
Q  285 ataaaaacacaactgcccataaccgccatcataagaagtct 325  Q
    ||||||||| ||| ||||||| |||||||||||||||||||    
T  20936491 ataaaaacataacagcccatacccgccatcataagaagtct 20936451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 42599696 - 42599799
Alignment:
Q  117 atccaagaaattcgagagtcttggtctctccct-ccaagaattagagagtttggtctctcccacccaaaaccatttagaaaatatcccatcatcacttcc 215  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||| || || ||||||||  || |||||||||||  | ||| |||||||||||||||| |    
T  42599696 atccaagaaattcaagagtcttggtttctcccttccaagaatttgaaagcttggtctc--cctcccaaaaccatgcaaaaactatcccatcatcactttc 42599793  T
Q  216 tccttt 221  Q
    ||||||    
T  42599794 tccttt 42599799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 33790040 - 33789980
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||    
T  33790040 ccaagaaattcgagagtcttggttctctcccctccaagaatttgagagcttggtctctccc 33789980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 12325014 - 12324954
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    ||||| ||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||||    
T  12325014 ccaaggaattcgagagtcttggttctctcccctccaaaaattcgagagtttggtctctccc 12324954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 13218740 - 13218803
Alignment:
Q  116 tatccaagaaattcgagagtcttggtctctccc-tccaagaattagagagtttggtctctccca 178  Q
    |||||||||||||| ||||| | |||||||||| | |||||||| ||||| |||||||||||||    
T  13218740 tatccaagaaattcaagagtttgggtctctcccttgcaagaattcgagagcttggtctctccca 13218803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 27659373 - 27659439
Alignment:
Q  118 tccaagaaattcgagagtcttggtctctccc-tccaagaattagagagtttggtctctcccacccaa 183  Q
    ||||| ||||||||||||||||||||||||| || || |||||||||  ||||||| |||| |||||    
T  27659373 tccaaaaaattcgagagtcttggtctctcccttcaaaaaattagagaacttggtctttccctcccaa 27659439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 12301251 - 12301316
Alignment:
Q  88 taaggatagatatattatacacaattaatatccaagaaattcgagagtcttggtctctccctccaa 153  Q
    |||||| ||| ||||| || ||||||| ||||||||||||||| ||||||  ||||||| ||||||    
T  12301251 taaggaaagaaatattgtatacaattactatccaagaaattcgggagtctcagtctctctctccaa 12301316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 38198617 - 38198711
Alignment:
Q  84 aaactaaggatagatatattatacacaattaatatccaagaaattcgagagtcttggtctctccctccaagaattagagagtttggtctctccca 178  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| ||||| |||||||| ||||    
T  38198617 aaactaatgatagatatattatacacaattactatccaagaaattcgagagtatcggtctctccctccaagaatttgagagcttggtctcaccca 38198711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 29857463 - 29857567
Alignment:
Q  117 atccaagaaattcgagagtcttggtctctccctccaagaattagagagtttggtctctcccacccaaaaccatttagaaaatatcccatcatcacttcct 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| | | |||||||||| | ||| |||||||| ||||||| ||    
T  29857463 atccaagaaattcgagagttttggtctctccctccaagaattagagagcttggtctctctctctcaaaaccattcaaaaactatcccataatcactttct 29857562  T
Q  217 ccttt 221  Q
    |||||    
T  29857563 ccttt 29857567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 40993821 - 40993705
Alignment:
Q  106 acacaattaatatccaagaaattcgagagtcttggtctctccctccaagaatta-gagagtttggtctctcccacccaaaaccatttagaaaatatccca 204  Q
    ||||||||| |||||||||||   || ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||| | ||| |||||||    
T  40993821 acacaattactatccaagaaacctgatagtcttggtctctccctccaagaattctgagagtttggtctctcccacccaaaatcattcaaaaactatccca 40993722  T
Q  205 tcatcacttcctccttt 221  Q
    |  |||||| |||||||    
T  40993721 ttgtcactttctccttt 40993705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 5176599 - 5176664
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctctccctccaagaattagagagtttggtctctcccacccaa 183  Q
    ||||| |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||    
T  5176599 ccaaggaattcgagagtcttgggtctctccctccaagaattcgagagcttggtctctcccaaccaa 5176664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 43506411 - 43506469
Alignment:
Q  120 caagaaattcgagagtcttggtctctccc-tccaagaattagagagtttggtctctccc 177  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||| ||||||||||||    
T  43506411 caagaaattcgagagtcttggtctctccctttgaagaattagagagcttggtctctccc 43506469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 21661242 - 21661181
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccca 178  Q
    |||||||||||||||||||||| ||||| |||||||| |||| ||||| |||||||||||||    
T  21661242 ccaagaaattcgagagtcttggttctctcccctccaataattcgagagcttggtctctccca 21661181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 40254564 - 40254505
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||||||    
T  40254564 ccaagaaattcgagagtcttggttctctcccctccaagaatt-gagagcttggtctctccc 40254505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 23990505 - 23990472
Alignment:
Q  116 tatccaagaaattcgagagtcttggtctctccct 149  Q
    |||||||||| |||||||||||||||||||||||    
T  23990505 tatccaagaagttcgagagtcttggtctctccct 23990472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 84 - 231
Target Start/End: Original strand, 34522999 - 34523148
Alignment:
Q  84 aaactaaggatagatatattat-acacaattaatatccaagaaattcgagagtcttggtctctccctccaagaattagagag-tttggtctctcccaccc 181  Q
    |||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||  |     
T  34522999 aaactaaggaaagagatattatgacacaattactatccaagaaattcgagagtcttggtctctccctccaagaactcgagagctttggtctctcccttcg 34523098  T
Q  182 aaaaccatttagaaaatatcccatcatcacttcctccttttctatctata 231  Q
    |||||||||   ||| |||||||| |||| || | ||||| || ||||||    
T  34523099 aaaaccattccaaaactatcccataatcagtttcgcctttcctttctata 34523148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 32992446 - 32992386
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctctccctccaagaattagagagtttggtctctccca 178  Q
    ||||| |||||||||||||||| |||||||||||||||| | ||||| || ||||||||||    
T  32992446 ccaaggaattcgagagtcttgggtctctccctccaagaactcgagagctttgtctctccca 32992386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 15739311 - 15739272
Alignment:
Q  139 ggtctctccctccaagaattagagagtttggtctctccca 178  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  15739311 ggtctctccctccaagaattcgagagtttgatctctccca 15739272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 52177071 - 52177032
Alignment:
Q  139 ggtctctccctccaagaattagagagtttggtctctccca 178  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  52177071 ggtctctccctccaagaatttgggagtttggtctctccca 52177032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 175458 - 175502
Alignment:
Q  118 tccaagaaattcgagagtcttggtctctccctccaagaattagaga 163  Q
    ||||||||||| |||||||||||||||| | |||||||||||||||    
T  175458 tccaagaaatttgagagtcttggtctct-cttccaagaattagaga 175502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 22072554 - 22072521
Alignment:
Q  145 tccctccaagaattagagagtttggtctctccca 178  Q
    |||||||||||||| |||||||||||||||||||    
T  22072554 tccctccaagaattcgagagtttggtctctccca 22072521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 14345104 - 14345017
Alignment:
Q  103 tatacacaattaatatccaagaaattcgagagtcttggtctctccctccaagaattagagagtttggtctctcccacccaaaaccatt 190  Q
    |||||| || || |||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||  ||||||||||||    
T  14345104 tatacataaatattatccaagaaattcgagagtcttggtctttccctccatgaattcgagagcttggtctctccgtcccaaaaccatt 14345017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 18133040 - 18133100
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||    
T  18133040 ccaagaaattcgagagtcttggttctctcccctccaagaattcgagagcttggtctctccc 18133100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 21535869 - 21535809
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||    
T  21535869 ccaagaaattcgagagtcttggttctctcccctccaagaattcgagagcttggtctctccc 21535809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 4303101 - 4303041
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    ||||||||||| ||||||||||| ||||||| |||||||||| ||||| ||||||||||||    
T  4303101 ccaagaaattctagagtcttggttctctcccctccaagaattcgagagcttggtctctccc 4303041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 18131834 - 18131894
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctctccc-tccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| |||||||| |||||| ||| ||||| ||||||||||||    
T  18131834 ccaagaaattcgagagtcttggttctctcccttccaagtattcgagagcttggtctctccc 18131894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 21395643 - 21395703
Alignment:
Q  119 ccaagaaattcgagagtcttggtc-tctccc-tccaagaattagagagtttggtctctccc 177  Q
    ||||||||||| |||||||||||  |||||| |||||||||| ||||| ||||||||||||    
T  21395643 ccaagaaattcaagagtcttggttgtctcccctccaagaattcgagagcttggtctctccc 21395703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 10045997 - 10046049
Alignment:
Q  99 atattatacacaattaatatccaagaaattcgagagtcttggtctctccctcc 151  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  10045997 atattatacacaattactatccaagaaattcgagagtcttggcctctccctcc 10046049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 8089771 - 8089831
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||    
T  8089771 ccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 8089831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 10582861 - 10582801
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||    
T  10582861 ccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 10582801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 10584067 - 10584007
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||    
T  10584067 ccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 10584007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 49122289 - 49122229
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||    
T  49122289 ccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 49122229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 30038110 - 30038171
Alignment:
Q  119 ccaagaaattcgagagtctt-ggtctctccct-ccaagaattagagagtttggtctctccca 178  Q
    ||||||||||| |||||| | ||||||||||| |||||||||  ||||||||||||||||||    
T  30038110 ccaagaaattcaagagtcgtcggtctctcccttccaagaattcaagagtttggtctctccca 30038171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 3815279 - 3815223
Alignment:
Q  123 gaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    ||||||||||||||||||| ||||||| |||||||||| ||| | ||||||||||||    
T  3815279 gaaattcgagagtcttggttctctcccctccaagaattcgagtgcttggtctctccc 3815223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 8788585 - 8788645
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    |||||||||| |||||||||||| ||||||| |||||||||| || || ||||||||||||    
T  8788585 ccaagaaattagagagtcttggttctctcccctccaagaattcgaaagcttggtctctccc 8788645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 36346592 - 36346652
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||| ||||| ||||| ||| ||||||||    
T  36346592 ccaagaaattcgagagtcttggttctctcccctccatgaattcgagagcttgatctctccc 36346652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 30640802 - 30640695
Alignment:
Q  99 atattatacacaattaatatccaagaaattcgagagtcttggtctct-ccctccaagaattagagagtttggtctctcccacccaaaaccatttagaaaa 197  Q
    |||||||||||| ||| || |||||||||| ||||| |||||||||| || ||||||||||  |||| |||||||||||| |||||| ||||| | |||     
T  30640802 atattatacacagttactagccaagaaatttgagagccttggtctctgccttccaagaattcaagagcttggtctctccctcccaaacccattcaaaaac 30640703  T
Q  198 tatcccat 205  Q
    ||||||||    
T  30640702 tatcccat 30640695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 17901220 - 17901153
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctcccacccaaa 184  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||||| ||||||    
T  17901220 ccaagaaattcgagagtcttggtactctcccctccaagaattcgagagcttggtctctccctcccaaa 17901153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 15039652 - 15039586
Alignment:
Q  118 tccaagaaattcgagagtcttggtctctccc-tccaagaattagagagtttggtctctcccacccaa 183  Q
    ||||||||||  ||||||||||||||||||| |||||||||||||||  ||| |||||||| |||||    
T  15039652 tccaagaaatgtgagagtcttggtctctcccttccaagaattagagaccttgatctctccctcccaa 15039586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 7175745 - 7175778
Alignment:
Q  118 tccaagaaattcgagagtcttggtctctccctcc 151  Q
    ||||||||||||||||||||||||||||||||||    
T  7175745 tccaagaaattcgagagtcttggtctctccctcc 7175778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 47746140 - 47746189
Alignment:
Q  125 aattcgagagtcttggtctctccctccaagaattagagagtttggtctct 174  Q
    ||||||||| |||||||||||||||||||||||| ||| | |||||||||    
T  47746140 aattcgagattcttggtctctccctccaagaattcgagggcttggtctct 47746189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 6081362 - 6081302
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||    
T  6081362 ccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 6081302  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 6082569 - 6082509
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||    
T  6082569 ccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 6082509  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 6398683 - 6398623
Alignment:
Q  116 tatccaagaaattcgagagtcttggtctctccc-tccaagaattagagagtttggtctctcc 176  Q
    ||||||||||||| ||||||||||||||||||| |||||||| | ||||| ||| |||||||    
T  6398683 tatccaagaaatt-gagagtcttggtctctcccgtccaagaaattgagagcttgctctctcc 6398623  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 24150334 - 24150269
Alignment:
Q  118 tccaagaaattcgagagtcttggtctctccct-ccaagaattagagagtttggtctctcccaccca 182  Q
    ||||||||||| || |||||||||| |||||| ||||||||||||||| |||||||||||| ||||    
T  24150334 tccaagaaatttgacagtcttggtccctcccttccaagaattagagagcttggtctctccctccca 24150269  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 19139432 - 19139374
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctc 175  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||    
T  19139432 ccaagaaattcgagagtcttggttctctcccctccaagaattagagagcttggtttctc 19139374  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 22950424 - 22950364
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||    
T  22950424 ccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 22950364  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 29526090 - 29526150
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    ||||||||| ||||||||||||| ||||||| |||||||||| ||||| ||||||||||||    
T  29526090 ccaagaaatccgagagtcttggttctctcccctccaagaattcgagagcttggtctctccc 29526150  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 39701640 - 39701700
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||    
T  39701640 ccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 39701700  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 39702870 - 39702930
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||    
T  39702870 ccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 39702930  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 1886150 - 1886087
Alignment:
Q  116 tatccaagaaattcgagagtcttggtctctccc-tccaagaattagagagtttggtctctccca 178  Q
    ||||||||||||| |||| |||| ||||||||| || |||||||  ||||||||||||||||||    
T  1886150 tatccaagaaatttgagattcttagtctctcccttctaagaattcaagagtttggtctctccca 1886087  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 29527303 - 29527364
Alignment:
Q  119 ccaagaaattcgagagtcttgg---tctctccctccaagaattagagagtttggtctctccc 177  Q
    ||||||||||||||||||||||   |||| |||||||||||||  |||| ||||||||||||    
T  29527303 ccaagaaattcgagagtcttggttctctccccctccaagaattcaagagcttggtctctccc 29527364  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 35144554 - 35144612
Alignment:
Q  121 aagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||  ||||||||||||    
T  35144554 aagaaattcgagagtcttggttctctcccctccaagaattcgagaccttggtctctccc 35144612  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 19934717 - 19934657
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    ||||||||||| ||||||||||| ||||||| |||||| ||| ||||| ||||||||||||    
T  19934717 ccaagaaattcaagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 19934657  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 37473688 - 37473632
Alignment:
Q  122 agaaattcgagagtcttgg-tctctccctccaagaattagagagtttggtctctccc 177  Q
    |||| |||||||||| ||| ||||||| |||||||||| ||||| ||||||||||||    
T  37473688 agaacttcgagagtcctgggtctctccgtccaagaattcgagagcttggtctctccc 37473632  T

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Target: scaffold0026 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 79682 - 79623
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctcc 176  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||||    
T  79682 ccaagaaattcgagagtcttggttctctcccctccaagaattcgagagcttggtctctcc 79623  T

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Target: scaffold0026; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 80878 - 80818
Alignment:
Q  119 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 177  Q
    |||| |||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||    
T  80878 ccaataaattcgagagtcttggttctctcccctccaagaattcgagagcttggtctctccc 80818  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 177915 - 177975
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||    
T  177915 ccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 177975  T

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Target: scaffold0011 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 205641 - 205701
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||    
T  205641 ccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 205701  T

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Target: scaffold0011; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 211718 - 211778
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctct-ccctccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||    
T  211718 ccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccc 211778  T

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Target: scaffold0063 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 33939 - 33902
Alignment:
Q  141 tctctccctccaagaattagagagtttggtctctccca 178  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  33939 tctctccctccaagaattcgagagcttggtctctccca 33902  T

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Target: scaffold0227 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 11237 - 11177
Alignment:
Q  119 ccaagaaattcgagagtcttgg-tctctccc-tccaagaattagagagtttggtctctccc 177  Q
    |||||||||||||||||||||| |||||||| ||||||  || ||||| ||||||||||||    
T  11237 ccaagaaattcgagagtcttggttctctcccttccaagttttcgagagcttggtctctccc 11177  T

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