View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_high_15 (Length: 406)
Name: NF13715_high_15
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_high_15 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0068 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 32094648 - 32095048
Alignment:
| Q |
1 |
tcatctttaaactcaacaaatattgcactcattccgaagggagactctcaaacatcaatgaaagataggaggccaatatacttgtgcaacgtaatttaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32094648 |
tcatctttaaactcaacaaatattgcactcattccgaagggagactctcaaacatcaatgaaagattggaggccaatatacttgtgcaacgtaatttaca |
32094747 |
T |
|
| Q |
101 |
aaattttatctaaggtacttgcaaatagactgaaagtggtgttggataaatgtatatcagatacacagtctgcgtttgtgccgggacgttctatcttgga |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32094748 |
aaattttagctaaggtacttgcaaatagactgaaagtggtgttgaataaatgtatatcagatacacagtctgcgtttgtaccgggacgttctatcttgga |
32094847 |
T |
|
| Q |
201 |
tgatgcaatataatgacaccaatagaaattatccatcatatgaagtctaaggttaaaggaaaattgggagaagtggctcttaaacttgatatcagtaaag |
300 |
Q |
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| T |
32094848 |
taatgc-----aatgacaccaatagaaattatccatcatatgaagtctaaggttaaaggaaaattgagagaagtggctcttaaactttatatcagtaaag |
32094942 |
T |
|
| Q |
301 |
cttacgaaagaattgagtggaactaccttcgagaaatcatggaaaaatgggattttctccacaatggattatgttatgtgtcgaaactgtcgactattct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32094943 |
cttacgaaagaattgagtggaactaccttcgagaaatcatggaaaaatgggattttctccacaatggattatgttatgtgtcgaaactgtcgactattct |
32095042 |
T |
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| Q |
401 |
gttctt |
406 |
Q |
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|||||| |
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| T |
32095043 |
gttctt |
32095048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 265 - 406
Target Start/End: Complemental strand, 46390184 - 46390042
Alignment:
| Q |
265 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
363 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||||| | ||||| |||||||| ||||||| ||| |
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| T |
46390184 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgagaggttatggataaaatgggcttttctcaaca |
46390085 |
T |
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| Q |
364 |
atggattatgttatgtgtcgaaactgtcgactattctgttctt |
406 |
Q |
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| T |
46390084 |
atggataatggtgtgtgtcgaaactgtcgactattctattctt |
46390042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 369
Target Start/End: Original strand, 48211263 - 48211368
Alignment:
| Q |
265 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
363 |
Q |
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||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||| | | ||||| |||||||| |||||| ||| |
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| T |
48211263 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgacaggttatggataaaatgggcttttctgaaca |
48211362 |
T |
|
| Q |
364 |
atggat |
369 |
Q |
| |
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|||||| |
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| T |
48211363 |
atggat |
48211368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 381604 - 381556
Alignment:
| Q |
97 |
tacaaaattttatctaaggtacttgcaaatagactgaaagtggtgttgg |
145 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||| |||| |
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| T |
381604 |
tacaaaattctagctaaggtacttgcaaatagactgaaagtggtcttgg |
381556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 369
Target Start/End: Original strand, 21702104 - 21702209
Alignment:
| Q |
265 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
363 |
Q |
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||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||| | | ||||| |||||||| |||||| ||| |
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| T |
21702104 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgacaggttatggataaaatgggcttttctgaaca |
21702203 |
T |
|
| Q |
364 |
atggat |
369 |
Q |
| |
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|||||| |
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| T |
21702204 |
atggat |
21702209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 33307565 - 33307509
Alignment:
| Q |
10 |
aactcaacaaatattgcactcattccgaagggagactctcaaacatcaatgaaagat |
66 |
Q |
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| T |
33307565 |
aactcaacaaatattgctctaattcctaaaggagagtctcaagcatccatgaaagat |
33307509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 369
Target Start/End: Complemental strand, 11806 - 11701
Alignment:
| Q |
265 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
363 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||| | | ||||| |||||||| |||||| ||| |
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| T |
11806 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgacaggttatggataaaatgggcttttctgaaca |
11707 |
T |
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| Q |
364 |
atggat |
369 |
Q |
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|||||| |
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| T |
11706 |
atggat |
11701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 23266702 - 23266593
Alignment:
| Q |
222 |
atagaaattatccatcatatgaagtctaaggttaaaggaaaattgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtgga |
321 |
Q |
| |
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|||||||| || |||||||||||||| || || || | || | |||||||||||||| ||||||||||| || ||||| || || | ||||||||||| |
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| T |
23266702 |
atagaaataatacatcatatgaagtcgaaagtcaaggataacgttggagaagtggctctgaaacttgatattagcaaagcatatgacaaaattgagtgga |
23266603 |
T |
|
| Q |
322 |
actaccttcg |
331 |
Q |
| |
|
|||| ||||| |
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| T |
23266602 |
actatcttcg |
23266593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 35319879 - 35319935
Alignment:
| Q |
10 |
aactcaacaaatattgcactcattccgaagggagactctcaaacatcaatgaaagat |
66 |
Q |
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||||||||||||||||| || ||||| || ||||| |||||| |||| ||||||||| |
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| T |
35319879 |
aactcaacaaatattgctctaattcctaaaggagagtctcaagcatccatgaaagat |
35319935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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