View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_high_18 (Length: 383)
Name: NF13715_high_18
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 367
Target Start/End: Complemental strand, 3208379 - 3208025
Alignment:
| Q |
13 |
atgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagccaaaggtcaagcagttaaagatgccggtggtg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208379 |
atgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagccaaaggtcaagcagttaaagatgccggtggtg |
3208280 |
T |
|
| Q |
113 |
ctgctatgatacttttgaacagtgaaggtgaagatttcaatccaattgctgatgttcatgttctacctgctgtgcatgtaagttactctgctggtttaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208279 |
ctgctatgatacttttgaacagtgaaggtgaagatttcaatccaattgctgatgttcatgttctacctgctgtgcatgtaagttactctgctggtttaaa |
3208180 |
T |
|
| Q |
213 |
catccaagattatataaattcaacttccacaccaatggccacaattttattcaaaggaactgtcattggaaatcccaatgcccctcaagttgcttcattt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208179 |
catccaagattatataaattcaacttccacaccaatggccacaattttattcaaaggaactgtcattggaaatcccaatgcccctcaagttgcttcattt |
3208080 |
T |
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| Q |
313 |
tcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacatacttg |
367 |
Q |
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| T |
3208079 |
tcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacatacttg |
3208025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 3202401 - 3202055
Alignment:
| Q |
17 |
agaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagccaaaggtcaagcagttaaagatgccggtggtgctgc |
116 |
Q |
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|||| ||||||||||||||||| |||| ||||||||||||| ||| | |||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3202401 |
agaatgttgatgttaagggaaaggtagtagtgtgtgagcaagatggatcggttgaaagagtagccaaaggtcaagcagttaaagatgctggtggtgctgc |
3202302 |
T |
|
| Q |
117 |
tatgatacttttgaacagtgaaggtgaagatttcaatccaattgctgatgttcatgttctacctgctgtgcatgtaagttactctgctggtttaaacatc |
216 |
Q |
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||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3202301 |
tatgatacttttgaatggtgaagatgaagctttcaatccaattgctgatgttcatgttctacctgctgtgcatgtaagttactctgctggtttatccatc |
3202202 |
T |
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| Q |
217 |
caagattatataaattcaacttccacaccaatggccacaattttattcaaaggaactgtcattggaaatcccaatgcccctcaagttgcttcattttcat |
316 |
Q |
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| T |
3202201 |
aaagattatataaactcaacttcaacaccaatggccacaattttattcaaaggaactgttattggaaatccactttcccctcaagttgcttcattttcat |
3202102 |
T |
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| Q |
317 |
caagaggtccaagcaaagcaagccctggaattctgaaaccagacata |
363 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3202101 |
caagaggtccaagcaaaacaagccctggaattctgaaaccagacata |
3202055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 13 - 363
Target Start/End: Complemental strand, 3216318 - 3215965
Alignment:
| Q |
13 |
atgaagaaggttgatgttaagggaaaaatagttgtgtgtgagcaaggtgggtttgttggaagagtagccaaaggtcaagcagttaaagatgccggtggtg |
112 |
Q |
| |
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|||||||| |||||||||||||||| ||||| |||||||| ||||||| ||||| | || ||| |||| ||||||||||||||| || ||||| |
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| T |
3216318 |
atgaagaacattgatgttaagggaaaggtagttttgtgtgaggaaggtggacttgtttcacaagcagcgaaagctcaagcagttaaagacgctggtggat |
3216219 |
T |
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| Q |
113 |
ctgctatgatacttttgaacagtgaaggtgaagatttcaatccaattgctgatgttcatgt---tctacctgctgtgcatgtaagttactctgctggttt |
209 |
Q |
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|||| ||||| || |||| ||| || | ||| ||| |||||| | |||||||| | ||||||||||| | ||||||||||||||||||||| |
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| T |
3216218 |
ctgccatgatcctcatgaatagtaaacttcaaggttttgatccaaaatccgatgttcaagacaatctacctgctgcacttgtaagttactctgctggttt |
3216119 |
T |
|
| Q |
210 |
aaacatccaagattatataaattcaacttccacaccaatggccacaattttattcaaaggaactgtcattggaaatcccaatgcccctcaagttgcttca |
309 |
Q |
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| |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||| |
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| T |
3216118 |
atccatcaaagattatataaactcaacttcaacaccaatggccacgattttattcaatggaactgttattggaaatcccaatgcccctcaagtagcttac |
3216019 |
T |
|
| Q |
310 |
ttttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacata |
363 |
Q |
| |
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|||||||||||||| |||| | ||| |||||| ||||||||||||||||||||| |
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| T |
3216018 |
ttttcatcaagaggaccaaaccaagaaagcccaggaattctgaaaccagacata |
3215965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 3220947 - 3220886
Alignment:
| Q |
301 |
gttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacat |
362 |
Q |
| |
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|||| ||||||||| |||||||| |||||| ||| ||| ||||||||||| ||||||||||| |
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| T |
3220947 |
gttgtttcattttcttcaagaggaccaagccaagaaagtcctggaattcttaaaccagacat |
3220886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 3178861 - 3178922
Alignment:
| Q |
301 |
gttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacat |
362 |
Q |
| |
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|||| ||||||||| |||||||| |||||| || ||| ||||||||||| ||||||||||| |
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| T |
3178861 |
gttgtttcattttcttcaagaggaccaagccaacaaagtcctggaattcttaaaccagacat |
3178922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 3231180 - 3231119
Alignment:
| Q |
301 |
gttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacat |
362 |
Q |
| |
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|||| ||||||||| |||||||| |||||| ||| ||| || |||||||| ||||||||||| |
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| T |
3231180 |
gttgtttcattttcttcaagaggaccaagccaagaaagtccaggaattcttaaaccagacat |
3231119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 3239979 - 3239918
Alignment:
| Q |
301 |
gttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacat |
362 |
Q |
| |
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|||| ||||||||| |||||||| |||||| || ||| ||||||||||| ||||||||||| |
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| T |
3239979 |
gttgtttcattttcttcaagaggaccaagccaacaaagtcctggaattcttaaaccagacat |
3239918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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