View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_high_2 (Length: 986)
Name: NF13715_high_2
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 889; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 889; E-Value: 0
Query Start/End: Original strand, 20 - 983
Target Start/End: Complemental strand, 45166397 - 45165438
Alignment:
| Q |
20 |
gctgggacaacgcctaatccaagaagtgtctgtgcttcattggctcaaatactaccatataaaacacnnnnnnnnnnnnnnaaatcattgaagattttct |
119 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45166397 |
gctgggacaacgcctaatccaaggagtgtctgtgcttcattggctcaaatactaccatataaaacactttttttttt----aaatcattgaagattttct |
45166302 |
T |
|
| Q |
120 |
gagccgattggttctgtaactctgagtgaccctccaagctctaagggtaccaaagggatgagagagtgtagaacatctgttataagtggcctgtaacttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45166301 |
gagccgattggttctgtaactctgagtgaccctccaagctctaagggtaccaaagggatgagagagtgtagaacatctgttataagtggcctataacttg |
45166202 |
T |
|
| Q |
220 |
gttcagcttgcacacatagcacagccactgcagctacctgtagagtagaatgttgagatgaattaagaagtactagcatttaacactcagcattaaaaca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45166201 |
gttcagcttgcacacatagcacagccactgcagctacctgtagagtagaatgttgagatgaattaagaagtactagcatttaacactcagcattaaaaca |
45166102 |
T |
|
| Q |
320 |
tgtgattacagtacttctattcaatgaacctgatataaatgcttcaaatccattgtattttggataacaggatctagaatacttggaagctttgatctgt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45166101 |
tgtgattacagtacttctattcaatgaacctgatataaatgcttcaaatccattgtattttggataacaggatctagaatacttggaagctttgatctgt |
45166002 |
T |
|
| Q |
420 |
cggttagctgaggcatggcctacatattgaatttgaaagtcttaaaccataaagtacagcaaaacttaaattttcatccattttctccattatgtaataa |
519 |
Q |
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| T |
45166001 |
cggttagctgaggcatggcctacatattgaatttgaaagtcttaaaccataaagtacagcaaaacttaaattttcatccatattctccattatgtaataa |
45165902 |
T |
|
| Q |
520 |
taatacatacccatgtaaccagagattgatattgatctgaggacatattatgcattggttttcttccagtaagtaattctagaaggacaactccgaaagc |
619 |
Q |
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| T |
45165901 |
taatacatacccatgtaaccagagattgatattgatctgaggacatattatgcattggttttcttccagtaagtaattctagaaggacaactccgaaagc |
45165802 |
T |
|
| Q |
620 |
atagacatcgctcttatcagttagtttacctgaaaaaagttaccattgttaaattttgttgagtaaaaagaacaaaacatcaagttccatagtccgagtc |
719 |
Q |
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| T |
45165801 |
atagacatcgctcttatcagttagtttacctgaaaaaagttaccattgttaaattttgttgagtaaaaagaacaaaacatcaagttccatagtccgagtc |
45165702 |
T |
|
| Q |
720 |
aaagcttaattataatctcatgcacctaatcagtatttatttagcataatcataatttaaaaactaataatatagaccatgtgatatgtactcgggtgcc |
819 |
Q |
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| T |
45165701 |
aaagcttaattataatctcatgcacctaatcagtatttatttagcataatcataattgaaaaactaataatatataccatgtgatatgtactcgggtgcc |
45165602 |
T |
|
| Q |
820 |
acatatcctaaagttcccgacatcttcatgttcttgtgttgcacgccagatgctacagcaagtccaaaatctgatagctgaatcacaaaattcagtataa |
919 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45165601 |
acatatcctaaagttcccgacatcttcatgttcttgtgttgcacgccagatgctacagcaagtccaaaatctgatagctgaatcacaaaattcagtataa |
45165502 |
T |
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| Q |
920 |
atgtaaatataagttttactattagttgacaacatgtaagcataatatgtcaaagtattatcta |
983 |
Q |
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| T |
45165501 |
atgtaaatataggttttactattagttgacaacatgtaagcataatatgtcaaagtataatcta |
45165438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 49120978 - 49121063
Alignment:
| Q |
173 |
agggatgagagagtgtagaacatctgttataagtggcctgtaacttggttcagcttgcacacatagcacagccactgcagctacct |
258 |
Q |
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||||| ||| ||||| ||||||||||| || ||||||| ||||||||| || | |||||||||||||||||| || ||||| |||| |
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| T |
49120978 |
agggacgagggagtgaagaacatctgtgattagtggccggtaacttggctctggttgcacacatagcacagctaccgcagcaacct |
49121063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 4273847 - 4273786
Alignment:
| Q |
137 |
aactctgagtgaccctccaagctctaagggtaccaaagggatgagagagtgtagaacatctg |
198 |
Q |
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| T |
4273847 |
aactctgagtgttcctccaagctcaacaggtacaagagggatgagggagtgtagaacatctg |
4273786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 2809945 - 2809884
Alignment:
| Q |
137 |
aactctgagtgaccctccaagctctaagggtaccaaagggatgagagagtgtagaacatctg |
198 |
Q |
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||||||||||| ||||||||||| | ||||| | ||||||||| |||||||||||||||| |
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| T |
2809945 |
aactctgagtgttcctccaagctcaacaggtacaagagggatgagggagtgtagaacatctg |
2809884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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