View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_high_20 (Length: 364)
Name: NF13715_high_20
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 32525609 - 32525368
Alignment:
| Q |
19 |
gttcaaggtgtcacaagtattgtggactagcatttcaacttgaagtgcactcatttccacctctgtaaacttcattgtaatctattaagatcata---ct |
115 |
Q |
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| T |
32525609 |
gttcaaggtgtcacaagtattgtggactagcatttcaacttgaagtgcacgcatttccacctctgtaaacttcattgtaatctattaagatcatacttct |
32525510 |
T |
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| Q |
116 |
tagagaacgtactacactattctagccttctaagattgaatgtctcnnnnnnnnnnnnnnnnntcacactgatagagagaatttaaatagaacggaaatt |
215 |
Q |
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| T |
32525509 |
tagagaacgtactacgctgttctagccttctaggattgaatgtctcaaaaaactggaaaaaaatcacactgacagagagaatttaaatagaacgaaaatt |
32525410 |
T |
|
| Q |
216 |
ttttggaatgaaaacgactaccaatatatattttcaatgaat |
257 |
Q |
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| T |
32525409 |
tcttggaatgaaaacgactaccaatatatattttcaatgaat |
32525368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 179 - 350
Target Start/End: Complemental strand, 32520892 - 32520723
Alignment:
| Q |
179 |
tcacactgatagagagaatttaaatagaacggaaattttttggaatgaaaacgactaccaatatatattttcaatgaattatatttaacatacatggacc |
278 |
Q |
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| T |
32520892 |
tcacactgacaaagagaatttaaatagaatggaaatttgttggaatgaaaacgactacaaatatatattttcaatgaat--tatctaacataccaggacc |
32520795 |
T |
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| Q |
279 |
gtataattttaaatacatggtcgagatcatttacaacaattttgcaaatgcgtttatatgaaccgtctaacc |
350 |
Q |
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| T |
32520794 |
gtatgactttaaatatacgattgagatcgtttacaacaattttgcaaatgcgttaatatgaaccgtataacc |
32520723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 32525367 - 32525304
Alignment:
| Q |
291 |
atacatggtcgagatcatttacaacaattttgcaaatgcgtttatatgaaccgtctaacctatg |
354 |
Q |
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| T |
32525367 |
atacatggtcgagatcgtttacaacaattttgcaaatgcgttaatatgaactgtctaacctatg |
32525304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 32520979 - 32520924
Alignment:
| Q |
19 |
gttcaaggtgtcacaagtattgtggactagcatttcaacttgaagtgcactcattt |
74 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||| ||| ||||| |||| |
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| T |
32520979 |
gttcaaggtgtcgcaagtactgtggactagcatttcaacttcaagggcacttattt |
32520924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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