View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_high_22 (Length: 349)
Name: NF13715_high_22
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 30780889 - 30781239
Alignment:
| Q |
1 |
ctaatctcatcaacaattctgttacaaattcagctacctttactctttctcatcaaccacacactggagtctcttcttttatttcttcgaattcattttt |
100 |
Q |
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| T |
30780889 |
ctaatctcatcaacaattctgtttcaaattcagctacctttactctttctcatcaaccacacactggagtctcttcttttatttcttcgaattcattgtt |
30780988 |
T |
|
| Q |
101 |
gatttctcggaagaggacgcttaaacctttggtttctggttctaaatcattgaggatgggattcagatagctatagttatttcgttgacattagatgtcg |
200 |
Q |
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| T |
30780989 |
gatttctcggaagaggacgcttaaacctttggtttctggttctaaatcattgaggatgggattcagatagctatagttatttcgttgacattagatgtcg |
30781088 |
T |
|
| Q |
201 |
atgcctaatgt---------tatcgatgaaattgggttttattttgttttaattttcttatcttatgtagtttgaggaaattaaaggtacaaatacaatt |
291 |
Q |
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| T |
30781089 |
atgcctaatgttcatcattgtatcgatgaaattgggtttgattttgttttaattttcttatcttatgtagtttgaggaaattaaaggtacaaatacaatt |
30781188 |
T |
|
| Q |
292 |
acaatgttcagattcagaatttacaattccataatttgatggactaatatt |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30781189 |
acaatgttcagattcagaatttacaattccataatttgatggactaatatt |
30781239 |
T |
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