View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_high_23 (Length: 345)
Name: NF13715_high_23
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 11224949 - 11224626
Alignment:
| Q |
18 |
tatactacatgcacaacatttaatcaacttaacacacccaaaaatatacttaaagctatagcttttccttcttcgttcacataatttccatcattcttta |
117 |
Q |
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| T |
11224949 |
tatactacatgcacaacatttaatcaacttaacacacccaaaagtatacttacaactattgcttttccttcttcgttcacataatttccatcattcttta |
11224850 |
T |
|
| Q |
118 |
ttaaagttgacaaaataacctcgcttcgacatacaggccttcctaattgttgttcctaacatcataaataaaatgtaaattaagaactcatcaataacag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11224849 |
ttaaagttgacaaaataacctcgcttcgacatacaggccttcctaattgttgttcctaacatcataaataaaatgtaaattaagaactcatcaataacag |
11224750 |
T |
|
| Q |
218 |
ctttgttgggatacataaatattttgaatctgcttaccattagacgaccccttcttgcgttgctcctactaccaccaacatgtgggactttaagcttctt |
317 |
Q |
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| T |
11224749 |
ctttgttgggatacataaatattttgaatctgcttaccattagacgaccccttcttgcgttgctcctactaccaccagcatgtgggactttaagcttctt |
11224650 |
T |
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| Q |
318 |
acgattttcggtattcatctcact |
341 |
Q |
| |
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|||||||||||||||| ||||||| |
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| T |
11224649 |
acgattttcggtattcttctcact |
11224626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 11225489 - 11225433
Alignment:
| Q |
20 |
tactacatgcacaacatttaatcaacttaacacacccaaaaatatacttaaagctata |
77 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |
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| T |
11225489 |
tactacatgcacaacatttaatcaac-caacacacccaaaagtatacttacagctata |
11225433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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