View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_high_38 (Length: 236)
Name: NF13715_high_38
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 52074919 - 52075141
Alignment:
| Q |
1 |
ttgatgctaatgagcagaacaaactaaactttgagtatgacttcatatatctcctgcactattttagaaaatctttccttgttttttcaataaaagtaca |
100 |
Q |
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| T |
52074919 |
ttgatgctaatgagcagaacaaactaaactttgagtatgacttcatatatctcctgcactattttagaaaatctttccttgttttttcaataaaagtaca |
52075018 |
T |
|
| Q |
101 |
ttcaa-tcaaacaaacacaagagaagtgactccttctctgaccacctatttggagaagacatcttttcatgtgggaagagaaggtgcttcttagtttaaa |
199 |
Q |
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| T |
52075019 |
ttcaattcaaacaaacacaagagaagtgactccttctctgaccgcctatttggagaagacatcttttcatgtggtaagagaaggtgcttcttagtttaaa |
52075118 |
T |
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| Q |
200 |
agaggatttggagggagtgaatt |
222 |
Q |
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| T |
52075119 |
ggaggatttggagggagtgaatt |
52075141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 49456229 - 49456267
Alignment:
| Q |
150 |
tggagaagacatcttttcatgtgggaagagaaggtgctt |
188 |
Q |
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| T |
49456229 |
tggaaaagacatcttttcatgtgggaagaggaggtgctt |
49456267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 7753144 - 7753105
Alignment:
| Q |
149 |
ttggagaagacatcttttcatgtgggaagagaaggtgctt |
188 |
Q |
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| T |
7753144 |
ttggagaagacatcttttcatgtgggaagaggaggtgctt |
7753105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 40386567 - 40386525
Alignment:
| Q |
146 |
tatttggagaagacatcttttcatgtgggaagagaaggtgctt |
188 |
Q |
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| T |
40386567 |
tatttggaggagacatcttttcatgtgggaagaggaggtgctt |
40386525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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