View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_high_39 (Length: 232)
Name: NF13715_high_39
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_high_39 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 24237259 - 24237490
Alignment:
| Q |
1 |
gtaaggatctaaaaatagggatattttcaatagttaatgttgctccagtacagaaccgaagagcaatgacagtaccaatnnnnnnncatggttgttgcta |
100 |
Q |
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| T |
24237259 |
gtaaggatctaaaaatagggatattttcaatagttaatgttgctccagtacagaaccgaagagcaatgacagtaccaataaaaaaacatggttgttgcta |
24237358 |
T |
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| Q |
101 |
ctagacagcgaaatggattttggaacttatcaaaggtactatttataatcccacaggtaccggaaccattaaaagaacacccaataatttattaggatat |
200 |
Q |
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| T |
24237359 |
ctagacagcgaaatgaattttggaacttatcaaaggtactatttataatcccacaggtaccggaaccattaaaagaacactcaataatttattaggatat |
24237458 |
T |
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| Q |
201 |
agtaagtatttgaaatacgctaacagaatacc |
232 |
Q |
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| T |
24237459 |
agtaagtatttgaaatacgctaacagaatacc |
24237490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 18338906 - 18338845
Alignment:
| Q |
132 |
aaaggtactatttataatcccacaggtaccggaaccattaaaagaacacccaataatttatt |
193 |
Q |
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| T |
18338906 |
aaaggtactgttaataatcccacgggtactgaaaccattaaaagaacgcccaataatttatt |
18338845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 18339026 - 18338921
Alignment:
| Q |
24 |
ttttcaatagttaatgttgctccagtacagaaccgaagagcaatgacagtaccaatnnnnnnncatggttgttgctactagacagcgaaatggattttgg |
123 |
Q |
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| T |
18339026 |
ttttcaataggtaatgttgctccaatacccaaccaaagagccacgacggtaccaatcaaaaag-acggttgttgctactggacggcgaaatgggttttgg |
18338928 |
T |
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| Q |
124 |
aacttat |
130 |
Q |
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||||||| |
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| T |
18338927 |
aacttat |
18338921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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