View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13715_high_7 (Length: 533)

Name: NF13715_high_7
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13715_high_7
NF13715_high_7
[»] chr1 (6 HSPs)
chr1 (8-399)||(15884903-15885294)
chr1 (8-393)||(12610760-12611145)
chr1 (8-399)||(12637754-12638145)
chr1 (425-511)||(15885317-15885403)
chr1 (437-514)||(12637648-12637725)
chr1 (429-514)||(12610642-12610727)
[»] scaffold0059 (1 HSPs)
scaffold0059 (8-392)||(62894-63278)
[»] scaffold0554 (1 HSPs)
scaffold0554 (239-383)||(5626-5770)
[»] chr3 (5 HSPs)
chr3 (240-401)||(23146647-23146811)
chr3 (267-401)||(23039772-23039909)
chr3 (267-401)||(23036895-23037032)
chr3 (239-323)||(23033659-23033743)
chr3 (300-396)||(23141003-23141099)
[»] chr6 (1 HSPs)
chr6 (267-385)||(21780681-21780799)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 8 - 399
Target Start/End: Original strand, 15884903 - 15885294
Alignment:
Q  8 cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt 107  Q
    |||| |||||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||    
T  15884903 cgaaaaatatgcacaatggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggtt 15885002  T
Q  108 ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga 207  Q
    | |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  15885003 cgaagcaagggtcatccatcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaaga 15885102  T
Q  208 agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttg 307  Q
    |||||||||||  ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||    
T  15885103 agagttcgcgtctttggggaagggagaatcaattgctggaggttttgacataggtgaactgtttccttcatctaaatggattcaacttgtttccggtttg 15885202  T
Q  308 aggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagccaaaga 399  Q
    ||||||||||||||||||||||||||||| |||||||  ||||| ||||| |||||||||||||||||||||||||| |||||||| |||||    
T  15885203 aggcctaaacttgagaggttgcatagacgtattgatcgaatactagaaaacatcatcattgaacataaagaagcaaattcaaaagcaaaaga 15885294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 12611145 - 12610760
Alignment:
Q  8 cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt 107  Q
    |||| |||||||||||||||||||||  ||||||| ||||| ||||| ||  | |||||||||||||||| ||||| ||||||| | ||||  |||| ||    
T  12611145 cgaaaaatatgcacaatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt 12611046  T
Q  108 ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga 207  Q
    |  | ||||| ||  || ||||  | ||| | ||||||||||||||||| ||| ||||| || | |||||||||||||| | |||| |||||| |  |||    
T  12611045 cgcaacaagggtcgcccgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagaga 12610946  T
Q  208 agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttg 307  Q
    |||||| |  |   | ||  | ||||||||||||||||||||||||||||| | |||| | ||||||||||| ||||||||||||| |||||| ||||||    
T  12610945 agagtttggatctattggagatggagaatcaattgcaggaggttttgacatagctgaattatttccttcagcgaaatggcttcaacgtgtttccggtttg 12610846  T
Q  308 aggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagc 393  Q
    ||||||||||| |||||||||||||| | ||||||||| ||||| ||||| ||  ||| |||||||||||||||||||||||||||    
T  12610845 aggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagc 12610760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 8 - 399
Target Start/End: Complemental strand, 12638145 - 12637754
Alignment:
Q  8 cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt 107  Q
    |||| |||||||||||| || ||| |  | ||||||||||| |||||||||  ||| ||||||||||||| | | ||||||||||||||||| |||| ||    
T  12638145 cgaaaaatatgcacaattgaacttcttacgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgatt 12638046  T
Q  108 ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga 207  Q
    |  | ||||| ||| |||||||| ||||| ||   |||||| ||||||   |  ||||   | | | |||||||||||||||||||||||||| ||||||    
T  12638045 cacaacaaggatcacccatcaacatcactcaagccgtagttacatcaattatgactattactacaagggctgcgtttggaaacaaatgcaaaggccaaga 12637946  T
Q  208 agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttg 307  Q
    | || |||  | |||||  || ||||||||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||     
T  12637945 acagctcgtatcgttggcaaatggagaatcagttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaactagtttctggtttc 12637846  T
Q  308 aggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagccaaaga 399  Q
    ||| ||||| |||||   |||||||||| |||||||| |||| | | ||| ||||||| ||||||||||||||| ||||||||||| |||||    
T  12637845 aggtctaaaattgaggtattgcatagacaaattgatcttatattagtaaacatcatcaatgaacataaagaagctaagtcaaaagcaaaaga 12637754  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 425 - 511
Target Start/End: Original strand, 15885317 - 15885403
Alignment:
Q  425 gatttggttgacgttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgta 511  Q
    ||||||||||||||||||||||||| |||| || | ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15885317 gatttggttgacgttcttctaaaataccaacgtcgcaatgataatgaaaaagatatatgcttaactgacaacaacatcaaggctgta 15885403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 437 - 514
Target Start/End: Complemental strand, 12637725 - 12637648
Alignment:
Q  437 gttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatc 514  Q
    ||||||| |||||| |||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||    
T  12637725 gttcttcaaaaatttcaaggtggtaatgatattgaccaagatatatgcttaactgacaacaatatcaaggctataatc 12637648  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 514
Target Start/End: Complemental strand, 12610727 - 12610642
Alignment:
Q  429 tggttgacgttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatc 514  Q
    |||| |||||||||||||||||||||||||| ||||| |   || |||||||||| |||||||| ||||| |||||| || |||||    
T  12610727 tggtagacgttcttctaaaattccaaggtggtaatgacagcaaccaagatatatgtttaactgataacaatatcaagtctataatc 12610642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 8 - 392
Target Start/End: Complemental strand, 63278 - 62894
Alignment:
Q  8 cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt 107  Q
    |||| |||||||||||| ||||||||  | ||||  ||| | | |||||||  ||||||||||||||||| |||  |||||||||||||||| |||| ||    
T  63278 cgaaaaatatgcacaattgagcttttgactcaaagtcgtatcaattcattccggccaataagagaagaagagctctccaatctcatcaaaaggattgatt 63179  T
Q  108 ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga 207  Q
       | ||||| |   |  ||||| |||||||||||||| || || ||| | || ||||| |||| | ||||||||||||  |||||||||||| ||||||    
T  63178 tgcaacaaggattgcctgtcaacatcactgaacttgtacttacaacaatgatttctatcatttcaagggctgcgtttggcgacaaatgcaaagcccaaga 63079  T
Q  208 agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttg 307  Q
    | |||| ||||  ||||| ||   || |||||||| |||||||||||| ||   |||| | ||||||||||| ||||||||||||||| | | |  |       
T  63078 acagtttgcgtcattgggaaatataggatcaattggaggaggttttgaaataattgaattatttccttcagccaaatggcttcaacttatatttaatcaa 62979  T
Q  308 aggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaag 392  Q
    |||||||||||| ||||||||||||||| | ||||||| ||||| ||||| ||| ||||| |||||||||||||||||| |||||    
T  62978 aggcctaaacttaagaggttgcatagacaacttgatcagatacttgaaaacatcgtcattcaacataaagaagcaaagttaaaag 62894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 239 - 383
Target Start/End: Original strand, 5626 - 5770
Alignment:
Q  239 attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaa 338  Q
    |||||||||||||||||| | || ||  ||||||| || ||||||||||| ||||  ||| |||||||||||||||| ||||||| | | ||| ||| ||    
T  5626 attgcaggaggttttgacttgggagatttgtttccatctgctaaatggctacaacaagttactggtttgaggcctaagcttgagatgcttcatcgacaaa 5725  T
Q  339 ttgatcatatactggaaaatatcatcattgaacataaagaagcaa 383  Q
     |||||| ||||| ||||| ||||||| ||| |||||||||||||    
T  5726 ctgatcaaatacttgaaaacatcatcaatgagcataaagaagcaa 5770  T

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Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 240 - 401
Target Start/End: Complemental strand, 23146811 - 23146647
Alignment:
Q  240 ttgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaat 339  Q
    ||||||| ||||||||| | || ||  ||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| ||     
T  23146811 ttgcagggggttttgacttgggagatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaac 23146712  T
Q  340 tgatcatatactggaaaatatcatcattgaacataaagaagcaaagt---caaaagccaaagatg 401  Q
    |||||| ||| | ||||| ||||||| ||| |||||||| | |||||   |||||||||||||||    
T  23146711 tgatcagatatttgaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatg 23146647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 401
Target Start/End: Complemental strand, 23039909 - 23039772
Alignment:
Q  267 tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 366  Q
    ||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| || |||||| ||| | ||||| |||||||     
T  23039909 tgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatcagatattagaaaacatcatcaa 23039810  T
Q  367 tgaacataaagaagcaaagt---caaaagccaaagatg 401  Q
    ||| |||||||| | |||||   |||||||||||||||    
T  23039809 tgagcataaagaggaaaagtacacaaaagccaaagatg 23039772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 401
Target Start/End: Complemental strand, 23037032 - 23036895
Alignment:
Q  267 tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 366  Q
    ||||||| |||||||||||||| || | | || |||||||||||||||| || |||||| | ||| ||| || |||||| ||| | ||||| |||||||     
T  23037032 tgtttccctcagctaaatggctacagcgtattactggtttgaggcctaagctggagaggattcatcgacaaactgatcagatattagaaaacatcatcaa 23036933  T
Q  367 tgaacataaagaagcaaagt---caaaagccaaagatg 401  Q
    ||| |||||||| | |||||   |||||||||||||||    
T  23036932 tgagcataaagaggaaaagtacacaaaagccaaagatg 23036895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 23033743 - 23033659
Alignment:
Q  239 attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga 323  Q
    ||||||||||||||| || | || ||  ||||||||||  ||||||||||||||| |||| ||||| | |||||||| |||||||    
T  23033743 attgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaacatgttactggtattaggcctaagcttgaga 23033659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 396
Target Start/End: Complemental strand, 23141099 - 23141003
Alignment:
Q  300 ctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagccaa 396  Q
    ||||||| |||||||  ||||||||| ||||| |||   ||||||| ||| ||||||| ||||||| ||| || || || || ||||||||||||||    
T  23141099 ctggtttaaggcctacccttgagagggtgcatcgacaggttgatcagataatggaaaacatcatcagtgagcacaaggaggccaagtcaaaagccaa 23141003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 385
Target Start/End: Complemental strand, 21780799 - 21780681
Alignment:
Q  267 tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 366  Q
    ||||||||||  |||||||| || ||| |||| |||| ||||||||||| |||||||| || ||  ||| || |||||| ||| | ||||| |||||||     
T  21780799 tgtttccttctactaaatggattgaacatgttactggattgaggcctaagcttgagagttttcaacgacaaactgatcagatatttgaaaacatcatcaa 21780700  T
Q  367 tgaacataaagaagcaaag 385  Q
     || |||||||| ||||||    
T  21780699 ggaccataaagaggcaaag 21780681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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