View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_low_10 (Length: 502)
Name: NF13715_low_10
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 4 - 483
Target Start/End: Complemental strand, 51318577 - 51318086
Alignment:
| Q |
4 |
ggaggagcagagaagagtgagaattaaagttacgttaaaatggaagaaaagggtggaagaggagttacctgacggtgacggaagtgcgagttttgaggag |
103 |
Q |
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| T |
51318577 |
ggaggagaagagaagagtgagaattaacgttacgttaaaatggaagaaaagggtggaagaggagttacctgacggtgacggaagtgcgagttttgaggag |
51318478 |
T |
|
| Q |
104 |
aaagggtgagaaggaggaagaggaggatttgggtttgttgatggtggatttgatcagagagaatgctggttgagaaaatgatctgtaacgagaagccatt |
203 |
Q |
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| T |
51318477 |
aaagggtgagaaggaggaagaggaggatttgggtttgttgatggtggatttgatcagagagaatgctggttgagaaaatgatctgtaacgagaagccatt |
51318378 |
T |
|
| Q |
204 |
gaagaacaaatcggcgccaccccccaaattttcgcacacctagggtttatacttactagttactacacaatagatagtacaaaggaaagggttttcccga |
303 |
Q |
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| T |
51318377 |
gaagaacaaatcggcgccaccccccaaattttcgcacacctagggtttatac-------ttaccacacaatagatagtacaaaggaaagggttttcccga |
51318285 |
T |
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| Q |
304 |
ggtttcaatattttaattttccttttcatataca-----------tacgc--------ttacattcaataagatcatttttatgccgatagtacatataa |
384 |
Q |
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|||||||||||||||||||||||||||||||||| ||| | | ||| |||||||||||||||||||||||| ||||||||||| |
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| T |
51318284 |
ggtttcaatattttaattttccttttcatatacattgtaaaaatttacaccaagttaatcacaatcaataagatcatttttatgccgacagtacatataa |
51318185 |
T |
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| Q |
385 |
atttaacccatcatcgtatttttctttgttatcttaaccttcaattatttaaaaaggatgatagtaatttagagtcttataaaatataaatacgatctc |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51318184 |
atttaacccatcatcgtatttttctttgttatcttaaccttccattatttaaaaaggatgatagtaatttagagtcttataaaatataagtacgatctc |
51318086 |
T |
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