View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13715_low_14 (Length: 431)

Name: NF13715_low_14
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13715_low_14
NF13715_low_14
[»] chr1 (2 HSPs)
chr1 (1-423)||(50469680-50470101)
chr1 (262-348)||(50063094-50063180)
[»] chr7 (6 HSPs)
chr7 (260-357)||(18296299-18296396)
chr7 (261-326)||(26839959-26840024)
chr7 (262-326)||(34892449-34892513)
chr7 (261-339)||(11915950-11916028)
chr7 (261-331)||(37356584-37356654)
chr7 (152-197)||(30954060-30954105)
[»] chr5 (1 HSPs)
chr5 (262-326)||(6045420-6045484)
[»] chr8 (2 HSPs)
chr8 (260-318)||(7019328-7019386)
chr8 (261-331)||(1296011-1296081)
[»] chr6 (1 HSPs)
chr6 (262-326)||(3792978-3793042)
[»] chr4 (2 HSPs)
chr4 (262-326)||(47404434-47404498)
chr4 (261-334)||(22278628-22278701)
[»] chr2 (1 HSPs)
chr2 (261-336)||(9372244-9372318)
[»] chr3 (1 HSPs)
chr3 (261-326)||(49392079-49392144)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 50469680 - 50470101
Alignment:
Q  1 cgtctcatcgtgagtttatttgaattccttaaaaatgnnnnnnnnctctctagttaaggtgataaaattatgaatggatatagatttgaatcttgattga 100  Q
    |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||| || ||||||||||||||||||||| |||||    
T  50469680 cgtctcatcgtgagtttatttgaattccttaaaaatgtttttttt-tctctagttaaggtgataaaattctggatggatatagatttgaatcttaattga 50469778  T
Q  101 tagatcaaaaaattcaatagttcattaaaattcattattaagtctaatgtccatccattaaatctaatgtccatccaatacatctattactatatttcac 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||    
T  50469779 tagatcaaaaaattcaatagtccattaaaattcattattaagtctaatgtccatccattaaatctaatgtccattcaatacatctactactagatttcac 50469878  T
Q  201 tggatggatattaatccgatctgtctaatagagtattgataatcggacacannnnnnnnagacacaatacagacaccataggtaatttggacttttcaac 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  50469879 tggatggatattaatccgatctgtctaatagagttttgataatcggacacattttttttagacacaatacagacaccataggtaatttggacttttcaac 50469978  T
Q  301 attaaagcaggggtattgttgtaaatacaccacacctctgttcttcataccttctcttatttttgcgtgttcactcacatgaccacaccatcatgttcct 400  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  50469979 attaaagcaggggtattgttgtaaatacaccacacgtctgttcttcatcccttctcttatttatgcgtgttcactcacatgacaacaccatcatgttcct 50470078  T
Q  401 gtcactaccacaccattcttctc 423  Q
    |||||||||||||||| ||||||    
T  50470079 gtcactaccacaccatccttctc 50470101  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 348
Target Start/End: Original strand, 50063094 - 50063180
Alignment:
Q  262 acacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaatacaccacacctctgttcttcat 348  Q
    |||||||| ||||||||||| |||||||  ||||||||||||||||| |||| |||  ||||| |||||  ||||||| ||||||||    
T  50063094 acacaatatagacaccatagataatttgatcttttcaacattaaagctggggcattactgtaattacacggcacctctcttcttcat 50063180  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 357
Target Start/End: Original strand, 18296299 - 18296396
Alignment:
Q  260 agacacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaatacaccacacctctgttcttcataccttctct 357  Q
    ||||||||||  ||||||||| | ||||| ||||||| |||||||||| | ||| |||||||||||||||||||| |||| |||||||| ||||||||    
T  18296299 agacacaatagggacaccataagcaatttagactttttaacattaaagtaagggcattgttgtaaatacaccacatctctattcttcatcccttctct 18296396  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 26839959 - 26840024
Alignment:
Q  261 gacacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaat 326  Q
    ||||||||||||||||||| |  ||||| ||||||||||||||||| || ||| ||||||||||||    
T  26839959 gacacaatacagacaccatggacaatttagacttttcaacattaaaacaagggcattgttgtaaat 26840024  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 34892449 - 34892513
Alignment:
Q  262 acacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaat 326  Q
    ||||||||||||| |||  | |||||||||||||||||| |||||| ||||||||| ||||||||    
T  34892449 acacaatacagacgccagggataatttggacttttcaaccttaaagaaggggtatttttgtaaat 34892513  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 11915950 - 11916028
Alignment:
Q  261 gacacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaatacaccacacctct 339  Q
    ||||||||||||||||||| |  ||||||||||||||||  |||||| | ||  |||||||||||||||  ||||||||    
T  11915950 gacacaatacagacaccatggacaatttggacttttcaatcttaaagaaaggacattgttgtaaatacagaacacctct 11916028  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 37356654 - 37356584
Alignment:
Q  261 gacacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaatacacc 331  Q
    ||||||||| ||||||||| |  ||||||||||||||||| |||||  | ||| |||||||||||||||||    
T  37356654 gacacaatatagacaccatggacaatttggacttttcaaccttaaaatatgggcattgttgtaaatacacc 37356584  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 30954060 - 30954105
Alignment:
Q  152 catccattaaatctaatgtccatccaatacatctattactatattt 197  Q
    |||||||||||| ||||||||||||||| |||| ||||||| ||||    
T  30954060 catccattaaatataatgtccatccaattcatccattactagattt 30954105  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 6045420 - 6045484
Alignment:
Q  262 acacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaat 326  Q
    ||||||||||||||||| || |||||||||||||||||| |||||  ||||||||| ||||||||    
T  6045420 acacaatacagacaccagagataatttggacttttcaaccttaaataaggggtatttttgtaaat 6045484  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 7019328 - 7019386
Alignment:
Q  260 agacacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattg 318  Q
    |||||||||||||||| |||| ||||||||||||||| || ||||||||||||| ||||    
T  7019328 agacacaatacagacatcataagtaatttggactttttaatattaaagcaggggcattg 7019386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 1296081 - 1296011
Alignment:
Q  261 gacacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaatacacc 331  Q
    ||||||||| ||||||||| |  ||||||||||||||||| |||||  | ||| |||||||||||||||||    
T  1296081 gacacaatatagacaccatggacaatttggacttttcaaccttaaaatatgggcattgttgtaaatacacc 1296011  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 3793042 - 3792978
Alignment:
Q  262 acacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaat 326  Q
    |||||||||||||||||  | |||||||||||| ||||| |||||| ||||||||| ||||||||    
T  3793042 acacaatacagacaccagggataatttggacttgtcaaccttaaagaaggggtatttttgtaaat 3792978  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 47404498 - 47404434
Alignment:
Q  262 acacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaat 326  Q
    |||||||||||||| ||  | |||||||||||||||||| |||||| ||||||||| ||||||||    
T  47404498 acacaatacagacatcagggataatttggacttttcaaccttaaagaaggggtatttttgtaaat 47404434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 334
Target Start/End: Original strand, 22278628 - 22278701
Alignment:
Q  261 gacacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaatacaccaca 334  Q
    ||||||||||||||||||| |||||||||||  |||||   |||||||| ||  | | ||||||||||||||||    
T  22278628 gacacaatacagacaccatgggtaatttggatatttcactcttaaagcatggacagttttgtaaatacaccaca 22278701  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 9372244 - 9372318
Alignment:
Q  261 gacacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaatacaccacacc 336  Q
    ||||||||||||||||||| || ||||| ||||| |||||||||||| | ||  |||||||| |||||| ||||||    
T  9372244 gacacaatacagacaccatgggcaattt-gacttctcaacattaaagtaaggacattgttgtgaatacaacacacc 9372318  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 49392079 - 49392144
Alignment:
Q  261 gacacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaat 326  Q
    ||||||||||||||||||  |||||||||||  ||||| | ||||||| |||||| | ||||||||    
T  49392079 gacacaatacagacaccaagggtaatttggatatttcacccttaaagcgggggtagttttgtaaat 49392144  T

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