View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_low_15 (Length: 424)
Name: NF13715_low_15
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 114 - 401
Target Start/End: Original strand, 4150046 - 4150329
Alignment:
| Q |
114 |
agagtgatagaattgattttaccttatatcaaatgttatgaaacataaacacaaacatacaaaccggacacgaaaccaacatctatatgcagacaccgat |
213 |
Q |
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| T |
4150046 |
agagtgttagaattgattttaccttctatcaaatgatatgaaacattgacacaaacatacaaaccgaacacggcacccacatctatacgtagacactgaa |
4150145 |
T |
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| Q |
214 |
aacaattaaggaaaattgaagtgattgtatgtaaccacacttattagc-tcatgttggtgtgagatgctgaaacgtgacagactcggacaccttgaattt |
312 |
Q |
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| T |
4150146 |
aacaattaaagaaaattgatgtgattgtatgaaatcacacctattaacatcatggtggtgtgagacattgaaacgtgacggactctgacacc------tt |
4150239 |
T |
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| Q |
313 |
gaatttgaagtgtcattgctacatatatcaaatgttattttaataatagtaattttgtttggcttg-aaattttacattaatatttgcat |
401 |
Q |
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| T |
4150240 |
aaatttaaagtgtcactactacatagatcaaatgttattttaataatagtaattttgtttggcttgaaaattttacattaatatttgcat |
4150329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 2492849 - 2492770
Alignment:
| Q |
18 |
caaacgtggttgatcaccatggattttaccaaaccattgcaggagaaaactccagcagggtttatggttcaatattatgt |
97 |
Q |
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| T |
2492849 |
caaacgtggttgatcaccatggattttaccaaaccattgcaggagaaaacaacagcaggatttatggttcaatattatgt |
2492770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 2489568 - 2489489
Alignment:
| Q |
18 |
caaacgtggttgatcaccatggattttaccaaaccattgcaggagaaaactccagcagggtttatggttcaatattatgt |
97 |
Q |
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| T |
2489568 |
caaatgtggttgatcaccaaggattttaccaaaccactgtaggagaaaactccagcagggtttatggttcaatattatgt |
2489489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 2495979 - 2495900
Alignment:
| Q |
18 |
caaacgtggttgatcaccatggattttaccaaaccattgcaggagaaaactccagcagggtttatggttcaatattatgt |
97 |
Q |
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||||||| |||||| ||||||||||||||||||||||| |||| |||| | | |||| |||||||| ||||||||||| |
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| T |
2495979 |
caaacgtcgttgatagccatggattttaccaaaccattgtaggaaaaaagcctaacaggctttatggtacaatattatgt |
2495900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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