View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13715_low_20 (Length: 380)

Name: NF13715_low_20
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13715_low_20
NF13715_low_20
[»] chr3 (4 HSPs)
chr3 (19-285)||(20933385-20933649)
chr3 (98-243)||(10973222-10973365)
chr3 (300-364)||(20933696-20933760)
chr3 (303-351)||(10973718-10973766)
[»] scaffold1804 (2 HSPs)
scaffold1804 (5-285)||(835-1114)
scaffold1804 (300-364)||(723-787)
[»] chr7 (4 HSPs)
chr7 (5-270)||(26373786-26374051)
chr7 (303-364)||(26374117-26374178)
chr7 (142-246)||(15464394-15464499)
chr7 (48-105)||(6677090-6677147)
[»] chr8 (3 HSPs)
chr8 (100-246)||(5685809-5685957)
chr8 (152-246)||(5717984-5718081)
chr8 (49-85)||(38291856-38291892)
[»] chr4 (2 HSPs)
chr4 (47-246)||(42756778-42756977)
chr4 (49-105)||(14285333-14285389)
[»] chr6 (4 HSPs)
chr6 (92-245)||(26591981-26592133)
chr6 (303-364)||(26594518-26594579)
chr6 (48-105)||(29214241-29214298)
chr6 (47-105)||(18089949-18090007)
[»] scaffold0021 (2 HSPs)
scaffold0021 (98-139)||(120676-120717)
scaffold0021 (303-351)||(126353-126401)
[»] scaffold0051 (1 HSPs)
scaffold0051 (231-267)||(17228-17264)
[»] chr1 (1 HSPs)
chr1 (48-84)||(11976918-11976954)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 20933385 - 20933649
Alignment:
Q  19 aagttgttgtgttgtacaatgaaaaaccccacatcttcatccaaaaccttaagacaataggtatattactcacctcacttatatgttcataaatatcaaa 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20933385 aagttgttgtgttgtacaatgagaaaccccacatcttcatccaaaaccttaagacaatag-tatattactcacctcacttatatgttcataaatatcaaa 20933483  T
Q  119 tcttgctggcaatgtagaatttttaacccacagatgaaacattaacatttctccttaagtttgacactctctatgtctatgatacgatcaaatagtcaaa 218  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20933484 tcttgctggcaatgtagaatttt-aacccacacatgacacattaacatttctccttaagtgtgacactctctatgtctatgatacgatcaaatagtcaaa 20933582  T
Q  219 taagaccagaggcacaacatggtaaaaacggtgggttgatggtgatttcatataagaatgctttttt 285  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||    
T  20933583 taagaccataggcacaacatggtaaaataggtgggttgatggtgatttcatataaggatgttttttt 20933649  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 10973222 - 10973365
Alignment:
Q  98 tatatgttcataaatatcaaatcttgctggcaatgtagaatttttaacccacagatgaaacattaacatttctccttaagtttgacactctctatgtcta 197  Q
    |||||||||||||||||||||||||| ||  ||| ||||||| | ||  |||| |||| |||||||||| |||| |||||| ||| ||||||||||||||    
T  10973222 tatatgttcataaatatcaaatcttgttgctaatatagaattat-aattcacaaatgacacattaacatctctc-ttaagtgtgagactctctatgtcta 10973319  T
Q  198 tgatacgatcaaatagtcaaataagaccagaggcacaacatggtaa 243  Q
    ||||| ||| |||||||||||||||  |||||||||||||||||||    
T  10973320 tgatatgataaaatagtcaaataaggtcagaggcacaacatggtaa 10973365  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 20933696 - 20933760
Alignment:
Q  300 tggtgaaaaaggaattcaaacatgagagaaatgacaaggaaaatgagtgagtagttggtagtttt 364  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  20933696 tggtgaaaaaggaattcaaacatgagagaaatgacaaggaaaacgagtgagtggttggtagtttt 20933760  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 10973718 - 10973766
Alignment:
Q  303 tgaaaaaggaattcaaacatgagagaaatgacaaggaaaatgagtgagt 351  Q
    |||||||| ||||| ||||||||||||||| |||| |||| ||||||||    
T  10973718 tgaaaaagtaattcgaacatgagagaaatggcaagaaaaaagagtgagt 10973766  T

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Target: scaffold1804 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: scaffold1804
Description:

Target: scaffold1804; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 1114 - 835
Alignment:
Q  5 gaggagcacagaccaagttgttgtgttgtacaatgaaaaaccccacatcttcatccaaaaccttaagacaataggtatattactcacctcacttatatgt 104  Q
    ||||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1114 gaggaacatagactaagttgttgtgttgtacaatgagaaaccccacatcttcatccaaaaccttaagacaataggtatattactcacctcacatatatgt 1015  T
Q  105 tcataaatatcaaatcttgctggcaatgtagaatttttaacccacagatgaaacattaacatttctccttaagtttgacactctctatgtctatgatacg 204  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||| |||| ||| |||||||||||||||||| ||||||||| | |||||||||||||    
T  1014 tcataaatatcaaatcttggtggcaatgtagaa-ttttaacccacacatgacacaataacatttctccttaagtgtgacactctttttgtctatgatacg 916  T
Q  205 atcaaatagtcaaataagaccagaggcacaacatggtaaaaacggtgggttgatggtgatttcatataagaatgctttttt 285  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||    
T  915 atcaaatagtcaaataagaccagaggcacaacatggtaaaataggtgggttgatggtgatttcatataaggatgttttttt 835  T

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Target: scaffold1804; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 787 - 723
Alignment:
Q  300 tggtgaaaaaggaattcaaacatgagagaaatgacaaggaaaatgagtgagtagttggtagtttt 364  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||  ||||||||||||    
T  787 tggtgaaaaaggaattcaaacatgagagaaatgacaagaaaaacgagtgagcggttggtagtttt 723  T

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Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 5 - 270
Target Start/End: Original strand, 26373786 - 26374051
Alignment:
Q  5 gaggagcacagaccaagttgttgtgttgtacaatgaaaaaccccacatcttcatccaaaaccttaagacaataggtatattactcacctcacttatatgt 104  Q
    ||||| || |||||||| |||||||||| ||||||| |||||||| ||||||  |||||| ||||||| | ||||||||||||||| |||| ||||||||    
T  26373786 gaggaacatagaccaaggtgttgtgttgcacaatgagaaaccccagatcttc--ccaaaagcttaagatagtaggtatattactcatctcatttatatgt 26373883  T
Q  105 tcataaatatcaaatcttgctggcaatgtagaatttttaacccacagatgaaacattaacatttctc-cttaagtttgacactctctatgtctatgatac 203  Q
    | ||||||||||||||||||||| ||||||||| ||||||| |||| |||| |||||||||||||||  |||| | ||| |  ||||||||||||||||     
T  26373884 ttataaatatcaaatcttgctggaaatgtagaa-ttttaactcacacatgacacattaacatttctcttttaactgtgaga--ctctatgtctatgatat 26373980  T
Q  204 gatcaaatagtcaaataagaccagaggcacaacatggt----aaaaacggtgggttgatggtgatttcata 270  Q
    ||  | |||||||||||||  ||||| |||| ||||||    ||||| ||||||||||||||| |||||||    
T  26373981 gaagatatagtcaaataaggtcagagacacatcatggtaaaaaaaaaaggtgggttgatggtgttttcata 26374051  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 26374117 - 26374178
Alignment:
Q  303 tgaaaaaggaattcaaacatgagagaaatgacaaggaaaatgagtgagtagttggtagtttt 364  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||| | | ||||||||    
T  26374117 tgaaaaagtaattcaaacatgagagaaataacaaggaaaatgagtgagttggttgtagtttt 26374178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 15464394 - 15464499
Alignment:
Q  142 taacccacagatgaaacattaacatttct-ccttaagtttgacactctctatgtctatgatacgatcaaatagtcaaataagaccagaggcacaacatgg 240  Q
    |||| |||| |||| |||||| ||| ||| |||||||| ||| ||||||||||||||||||| ||| ||||| |||||||    |||||||| |||||||    
T  15464394 taactcacacatgacacattagcatctctaccttaagtgtgagactctctatgtctatgatatgataaaataatcaaatattgtcagaggcaaaacatgg 15464493  T
Q  241 taaaaa 246  Q
    ||||||    
T  15464494 taaaaa 15464499  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 6677090 - 6677147
Alignment:
Q  48 cacatcttcatccaaaaccttaagacaataggtatattactcacctcacttatatgtt 105  Q
    |||||||||||| |||||||||||||| | ||||||| | ||| ||||| ||||||||    
T  6677090 cacatcttcatctaaaaccttaagacatttggtatatgagtcatctcacatatatgtt 6677147  T

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Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 100 - 246
Target Start/End: Complemental strand, 5685957 - 5685809
Alignment:
Q  100 tatgttcataaatatcaaatcttgctggcaatgtagaatttttaacccacagatgaaacattaacatttctcctt-aagtttgacactctctatgtctat 198  Q
    |||||| |||||||||||||||||||| |||||||||||| | ||| |||| |||| |||||||||| ||||||| |||| ||| | |||||||||||||    
T  5685957 tatgttgataaatatcaaatcttgctgccaatgtagaattat-aactcacacatgacacattaacatctctcctttaagtgtgagattctctatgtctat 5685859  T
Q  199 gatac--gatcaaatagtcaaataagaccagaggcacaacatggtaaaaa 246  Q
    ||||   ||  |||||||||||||||  ||||||||| ||||||||||||    
T  5685858 gatatatgaaaaaatagtcaaataaggtcagaggcaccacatggtaaaaa 5685809  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 246
Target Start/End: Complemental strand, 5718081 - 5717984
Alignment:
Q  152 atgaaacattaacatttctcctt-aagtttgacactctctatgtctatgatac--gatcaaatagtcaaataagaccagaggcacaacatggtaaaaa 246  Q
    |||| |||||||||||||||||| |||| ||| ||||||||| |||||||||   ||| |||||||||||||||  ||||| ||||| ||||||||||    
T  5718081 atgacacattaacatttctcctttaagtgtgagactctctatatctatgatatatgataaaatagtcaaataaggtcagagacacaatatggtaaaaa 5717984  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 38291892 - 38291856
Alignment:
Q  49 acatcttcatccaaaaccttaagacaataggtatatt 85  Q
    |||||||||||||||||||||||||| ||||||||||    
T  38291892 acatcttcatccaaaaccttaagacattaggtatatt 38291856  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 246
Target Start/End: Original strand, 42756778 - 42756977
Alignment:
Q  47 ccacatcttcatccaaaaccttaagacaataggtatattactcacctcacttatatgttcataaatatcaaatcttgctggcaatgtagaatttttaacc 146  Q
    |||||||||||||||||||||||||||  ||||||||||  |||  | |||||||||||  | |||||  | ||||||   |||||||||| |||| ||     
T  42756778 ccacatcttcatccaaaaccttaagactttaggtatatttgtcatttaacttatatgttgctcaatatatagtcttgcatccaatgtagaagtttt-act 42756876  T
Q  147 cacagatgaaacattaacatttct-ccttaagtttgacactctctatgtctatgatacgatcaaatagtcaaataagaccagaggcacaacatggtaaaa 245  Q
    |||| |||| |||||||||| ||| |||||||| ||| | ||||  ||||||||||| | | | ||||  ||||||||  ||||| ||||||||||||||    
T  42756877 cacaaatgacacattaacatctctcccttaagtgtgagattctccgtgtctatgatatggtgagatagaaaaataagataagaggaacaacatggtaaaa 42756976  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 14285389 - 14285333
Alignment:
Q  49 acatcttcatccaaaaccttaagacaataggtatattactcacctcacttatatgtt 105  Q
    |||||||| |||||| |||||||||| ||| ||||||  ||| ||||||||||||||    
T  14285389 acatcttcgtccaaatccttaagacattagatatattgatcatctcacttatatgtt 14285333  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 26591981 - 26592133
Alignment:
Q  92 ctcacttatatgttcataaatatcaaatcttgctggcaatgtagaatttttaacccacagatgaaacattaacatttct-ccttaagtttgacactctct 190  Q
    |||||||||||| ||||| ||||||||||||| || |||| ||||||| | | | ||||  |||  ||||||||| | | |||||||| |||  ||||||    
T  26591981 ctcacttatatgctcatagatatcaaatcttgttgtcaatatagaattataagcacaca--tgatgcattaacatctttaccttaagtgtgagcctctct 26592078  T
Q  191 atgtctatgatacgatcaaatagtcaaataagaccagaggcacaacatggtaaaa 245  Q
    |||||||||||| ||| || |||| |||||||  |||| ||||||||||||||||    
T  26592079 atgtctatgataagataaagtagttaaataaggtcagatgcacaacatggtaaaa 26592133  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 26594518 - 26594579
Alignment:
Q  303 tgaaaaaggaattcaaacatgagagaaatgacaaggaaaatgagtgagtagttggtagtttt 364  Q
    |||||||||||||| ||||||||| |||||||||| |||| |||||||| ||||||| ||||    
T  26594518 tgaaaaaggaattcgaacatgagaaaaatgacaagaaaaaagagtgagttgttggtaatttt 26594579  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 29214241 - 29214298
Alignment:
Q  48 cacatcttcatccaaaaccttaagacaataggtatattactcacctcacttatatgtt 105  Q
    ||||||||||||||||  ||||||||||||||||||| | ||| ||||||| ||||||    
T  29214241 cacatcttcatccaaagtcttaagacaataggtatatgagtcatctcacttgtatgtt 29214298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 18089949 - 18090007
Alignment:
Q  47 ccacatcttcatccaaaaccttaagacaataggtatattactcacctcacttatatgtt 105  Q
    ||||||||||| ||||||||||||| || ||||||||||  ||| |||| |||||||||    
T  18089949 ccacatcttcacccaaaaccttaaggcattaggtatattgttcatctcaattatatgtt 18090007  T

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Target: scaffold0021 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 120676 - 120717
Alignment:
Q  98 tatatgttcataaatatcaaatcttgctggcaatgtagaatt 139  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  120676 tatatgttcataaatatcaaatcttgctgctaatgtagaatt 120717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 126353 - 126401
Alignment:
Q  303 tgaaaaaggaattcaaacatgagagaaatgacaaggaaaatgagtgagt 351  Q
    |||||||| ||||| ||||||||||||||| ||||||||| ||||||||    
T  126353 tgaaaaagtaattcgaacatgagagaaatggcaaggaaaaagagtgagt 126401  T

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Target: scaffold0051 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 17264 - 17228
Alignment:
Q  231 cacaacatggtaaaaacggtgggttgatggtgatttc 267  Q
    |||||||||||||||| | ||||||||||||||||||    
T  17264 cacaacatggtaaaaaagttgggttgatggtgatttc 17228  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 11976954 - 11976918
Alignment:
Q  48 cacatcttcatccaaaaccttaagacaataggtatat 84  Q
    ||||||||||||||||||||||||||| || ||||||    
T  11976954 cacatcttcatccaaaaccttaagacactatgtatat 11976918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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