View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_low_25 (Length: 342)
Name: NF13715_low_25
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 155 - 331
Target Start/End: Original strand, 7930988 - 7931164
Alignment:
| Q |
155 |
ttaaggagtatataatattgctgaataaacaaaagttaccatgtagctctgaatctgccacacttctctgcctctctagcaacattatctttccactatc |
254 |
Q |
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| T |
7930988 |
ttaaggagtatataatattgctgaataaacaaaagttaccatgtagctctgaatctgccacacttctctgtctctctagcaacattatctttccactatc |
7931087 |
T |
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| Q |
255 |
aattggaagagagcaagatctctctaaagatggcacaaaggaacaccaatttcccatctctccagccattgatgatg |
331 |
Q |
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| T |
7931088 |
aattggaagagagcaagatctctctaaagatggcacaaaggaacaccaattttccatctctccagccattgatgatg |
7931164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 7930333 - 7930481
Alignment:
| Q |
17 |
aatattgataatgtcgttatattattcgtaaataccaactaagggacgataagatcatattgaaatataaatat----aaatattgacaatgtaatagca |
112 |
Q |
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| T |
7930333 |
aatattgataatgtcgtcatattatttgtaaataccaactaagggacgataagatcattttgaaatataaatatatataaatattgacaatgtaatagca |
7930432 |
T |
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| Q |
113 |
tctctaatgaagagtcttttacctaataaagacaccaacctattaagga |
161 |
Q |
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| T |
7930433 |
tctctaatgaagagtcttttacctaataaagacaccaacctattaagga |
7930481 |
T |
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