View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_low_26 (Length: 341)
Name: NF13715_low_26
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 35241331 - 35241257
Alignment:
| Q |
101 |
tcacatacttgagatcattccaatccaccaccaaggttcatacaaatatgcatgtcctcccgaggctggtcaaat |
175 |
Q |
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| T |
35241331 |
tcacatacttgagatcattccaatccaccaccaaggttcatacaaatatgcatgtcctcccgaggctggtcaaat |
35241257 |
T |
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Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 35241192 - 35241127
Alignment:
| Q |
240 |
agggtatcaaagagtaagcacattaattcaagaaggtgaacctgcgcttcttcctctagtgctgga |
305 |
Q |
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| T |
35241192 |
agggtatcaaagagtaagcacattaattcaagaaggtgaacctgcgcttcttcctctggtgctgga |
35241127 |
T |
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