View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_low_29 (Length: 299)
Name: NF13715_low_29
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 41080896 - 41081171
Alignment:
| Q |
16 |
ctttgcaatgctatcattacaaaactcttccatctcctccactccgtcttccaacgtagggttcacagttcggccttcgatgaagtttcttggagcataa |
115 |
Q |
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| T |
41080896 |
ctttgtaatgctatcattacaaaactcttccatctcctccactccgtcttccaacgtagggttcacagttcggccttcgatgaagtttcttggagcataa |
41080995 |
T |
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| Q |
116 |
gtttcctcaccaatgcctgagttgacaacagctttgaggaaaaacttgcactcatcaagaccaatactctcattgtttcctataatcttgccacattgta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080996 |
gtttcctcaccaatgcctgagttgacaacagctttgaggaagaacttgcactcatcaagaccaatactctcattgtttcctataatcttgccacattgta |
41081095 |
T |
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| Q |
216 |
cacttccaagttttctttcatcacttggcttgtaacattgatagtttaatatgtaacactcttggtcccttctctg |
291 |
Q |
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| T |
41081096 |
cacttccaagttttctttcatcacttggcttgtaacattgatagtttaatatgtaacactcttggtcccttctctg |
41081171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 23078634 - 23078679
Alignment:
| Q |
240 |
ttggcttgtaacattgatagtttaatatgtaacactcttggtccct |
285 |
Q |
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| T |
23078634 |
ttggcttgtaacattggtaatctaatatgtaacactcttggtccct |
23078679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 23110335 - 23110290
Alignment:
| Q |
240 |
ttggcttgtaacattgatagtttaatatgtaacactcttggtccct |
285 |
Q |
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| T |
23110335 |
ttggcttgtaacattggtaatctaatatgtaacactcttggtccct |
23110290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 23074026 - 23074071
Alignment:
| Q |
240 |
ttggcttgtaacattgatagtttaatatgtaacactcttggtccct |
285 |
Q |
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|||||||||||||||| || | ||||||||| |||||||||||||| |
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| T |
23074026 |
ttggcttgtaacattggtaatctaatatgtagcactcttggtccct |
23074071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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