View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13715_low_3 (Length: 959)

Name: NF13715_low_3
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13715_low_3
NF13715_low_3
[»] chr8 (10 HSPs)
chr8 (466-827)||(44915134-44915494)
chr8 (29-192)||(7748993-7749158)
chr8 (457-602)||(7748841-7748986)
chr8 (605-697)||(7749019-7749111)
chr8 (876-940)||(44915543-44915607)
chr8 (374-459)||(7749361-7749446)
chr8 (57-128)||(44915275-44915346)
chr8 (694-807)||(7749177-7749283)
chr8 (381-459)||(44915584-44915663)
chr8 (878-915)||(7749318-7749355)
[»] chr5 (6 HSPs)
chr5 (237-459)||(2339109-2339331)
chr5 (694-827)||(2339047-2339173)
chr5 (458-602)||(2338760-2338904)
chr5 (629-682)||(2338946-2338999)
chr5 (21-62)||(2338903-2338944)
chr5 (878-916)||(2339188-2339226)


Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 466 - 827
Target Start/End: Original strand, 44915134 - 44915494
Alignment:
Q  466 tttccccagcaggtttttgaaggggggttaaatcaacagtcagggggcactcaatttgcttctagtcagcaaggtatgaggttagtcgccaaggcacaac 565  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44915134 tttccacagcaggtttttgaaggggggttaaatcaacagtcagggggcactcaatttgcttctagtcagcaaggcatgaggttagtcgccaaggcacaac 44915233  T
Q  566 aatttgatacggaaagaatagacggtgcagggataaagggcaatttagacccacaacaagtacggcttcaacaaagaatggcacaacatgcatccatgag 665  Q
    |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44915234 aatttgatacagaaagaatagatggtgcagggataaagtgcaatttagacccacaacaagtacggcttcaacaaagaatggcacaacatgcatccatgag 44915333  T
Q  666 acctaatttcccacagacaacctcgaatagtcctcagttatctaatgggatattacctcactcgctaatgctattatcttcaaaatctggtgaattttct 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44915334 acctaatttcccacagacaacctcgaatagtcctcagttatctaatgggatattacctcactcgctaatgctattatcttcaaaatctggtgaattttct 44915433  T
Q  766 aagggttcagttggactaaagttttagaccgtcttcaatgaaaaatgcatctggagcattac 827  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  44915434 aagggttcagttggact-aagttctagaccgtcttcaatgaaaaatgcatctggagcattac 44915494  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 7748993 - 7749158
Alignment:
Q  29 taaaagtgaggtggaaatgtatgcaagaaatttagacccacaacaattgcggattcaacaaagaatgctacagcatgcattgatgagacctaatttcc-- 126  Q
    |||||||||| |||||||| ||||||| |||||||||||||||||||| ||| |||| |||||||||| ||| |||||||| |||||| |||||||||      
T  7748993 taaaagtgagttggaaatggatgcaagcaatttagacccacaacaattacggcttcagcaaagaatgccacaacatgcattcatgagatctaatttccca 7749092  T
Q  127 cagacaacctcaaattgtctgggccagcaaatcatgaaagaagcaaaaaaggaggatcatcttcag 192  Q
    ||||||||||  ||| |||||||||||||||||  ||||||||| |||||||||||||| ||||||    
T  7749093 cagacaacctggaatagtctgggccagcaaatcgagaaagaagccaaaaaggaggatcagcttcag 7749158  T

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Target: chr8; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 457 - 602
Target Start/End: Original strand, 7748841 - 7748986
Alignment:
Q  457 gttcagaaatttccccagcaggtttttgaaggggggttaaatcaacagtcagggggcactcaatttgcttctagtcagcaaggtatgaggttagtcgcca 556  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| |  ||||||  | ||||||||||||| |||||||||| ||||||||||| ||||    
T  7748841 gttcagaagtttccccagcagggttttgaaggggggttaaatcaagatacaggggctattcaatttgcttctggtcagcaaggcatgaggttagttgcca 7748940  T
Q  557 aggcacaacaatttgatacggaaagaatagacggtgcagggataaa 602  Q
    ||| | |||||||||| | |||||||||||| ||||||||||||||    
T  7748941 aggaagaacaatttgaaatggaaagaatagatggtgcagggataaa 7748986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 605 - 697
Target Start/End: Original strand, 7749019 - 7749111
Alignment:
Q  605 gcaatttagacccacaacaagtacggcttcaacaaagaatggcacaacatgcatccatgagacctaatttcccacagacaacctcgaatagtc 697  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||||    
T  7749019 gcaatttagacccacaacaattacggcttcagcaaagaatgccacaacatgcattcatgagatctaatttcccacagacaacctggaatagtc 7749111  T

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Target: chr8; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 876 - 940
Target Start/End: Original strand, 44915543 - 44915607
Alignment:
Q  876 ctgcaatggcttcacatacagctgctgttggaactccatctacaaaggcaacaacagacacacct 940  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44915543 ctgcaatggcttcacatacagctgctgttggaactccatctacaaaggcaacaacagacacacct 44915607  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 374 - 459
Target Start/End: Original strand, 7749361 - 7749446
Alignment:
Q  374 attctacacaaaggcaacaacaggaacgcctagctgcaaaacggagatctaagtccgttcccaagaccccagcgatgagtgtagtt 459  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||| ||| |||||||||| || || ||||||| ||||    
T  7749361 attctacacaaaggcaacaacaggcacacctagctgcaaaacggagatctaattcccttcccaagacacctgcaatgagtggagtt 7749446  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 44915275 - 44915346
Alignment:
Q  57 aatttagacccacaacaattgcggattcaacaaagaatgctacagcatgcattgatgagacctaatttccca 128  Q
    |||||||||||||||||| | ||| ||||||||||||||  ||| |||||||  ||||||||||||||||||    
T  44915275 aatttagacccacaacaagtacggcttcaacaaagaatggcacaacatgcatccatgagacctaatttccca 44915346  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 807
Target Start/End: Original strand, 7749177 - 7749283
Alignment:
Q  694 agtcctcagttatctaatgggatattacctcactcgctaatgctattatcttcaaaatctggtgaattttctaagggttcagttggactaaagttttaga 793  Q
    ||||||| |||||||| |||||  ||||||||||||| |      |||||||||||||| |||||||||||||| |||||||||||||   |||||| ||    
T  7749177 agtcctcggttatctagtgggacgttacctcactcgcca------ttatcttcaaaatcaggtgaattttctaacggttcagttggac-ccagttttgga 7749269  T
Q  794 ccgtcttcaatgaa 807  Q
    || |||||||||||    
T  7749270 ccatcttcaatgaa 7749283  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 459
Target Start/End: Original strand, 44915584 - 44915663
Alignment:
Q  381 acaaaggcaacaacaggaacgcctagctgcaaaacgga-gatctaagtccgttcccaagaccccagcgatgagtgtagtt 459  Q
    ||||||||||||||||  || ||||||||||||| |||  |||||| ||| |||||||||||||| | ||||||| ||||    
T  44915584 acaaaggcaacaacagacacacctagctgcaaaatggataatctaattcccttcccaagaccccaacaatgagtggagtt 44915663  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 878 - 915
Target Start/End: Original strand, 7749318 - 7749355
Alignment:
Q  878 gcaatggcttcacatacagctgctgttggaactccatc 915  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  7749318 gcaatggcttcacttactgctgctgttggaactccatc 7749355  T

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Target: chr5 (Bit Score: 95; Significance: 6e-46; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 237 - 459
Target Start/End: Original strand, 2339109 - 2339331
Alignment:
Q  237 ttctgatggttcagctggaccaaattttagacggtcttcaatgaaaattacacctggagcattacaaaaggagaaggcaccaatggcttctcatgccgca 336  Q
    |||| ||||||||| |||||||| |||| |||  |||||| |||| | | || | |||||||||||||| ||||||||| |||||||||| | | | ||     
T  2339109 ttctaatggttcagttggaccaagttttggaccatcttcagtgaacaatgcatcaggagcattacaaaaagagaaggcagcaatggcttcacgtactgct 2339208  T
Q  337 gctgttggaactccatctttgacttccaatgctaataattctacacaaaggcaacaacaggaacgcctagctgcaaaacggagatctaagtccgttccca 436  Q
    |||||||||||||||||||||||||  | ||||||| ||||||| |||||||||||||||| || |||||||||||||||| ||||||| ||| ||||||    
T  2339209 gctgttggaactccatctttgacttatattgctaatgattctactcaaaggcaacaacaggcacacctagctgcaaaacggggatctaattcctttccca 2339308  T
Q  437 agaccccagcgatgagtgtagtt 459  Q
    |||||||| | ||||||| ||||    
T  2339309 agaccccatcaatgagtggagtt 2339331  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 694 - 827
Target Start/End: Original strand, 2339047 - 2339173
Alignment:
Q  694 agtcctcagttatctaatgggatattacctcactcgctaatgctattatcttcaaaatctggtgaattttctaagggttcagttggactaaagttttaga 793  Q
    ||||||| |||||||| ||||| ||||||||||||||||      ||||||||||||||||||||||||||||| |||||||||||||  ||||||| ||    
T  2339047 agtcctcggttatctagtgggacattacctcactcgcta------ttatcttcaaaatctggtgaattttctaatggttcagttggac-caagttttgga 2339139  T
Q  794 ccgtcttcaatgaaaaatgcatctggagcattac 827  Q
    || |||||| |||| |||||||| ||||||||||    
T  2339140 ccatcttcagtgaacaatgcatcaggagcattac 2339173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 458 - 602
Target Start/End: Original strand, 2338760 - 2338904
Alignment:
Q  458 ttcagaaatttccccagcaggtttttgaaggggggttaaatcaacagtcagggggcactcaatttgcttctagtcagcaaggtatgaggttagtcgccaa 557  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||| || ||||||  | ||||||| ||||| |||||||||| ||||||||||| |  ||    
T  2338760 ttcagaagtttccccagcaggtttttgatgggggtttaaatcaagagacaggggctattcaattttcttctggtcagcaaggcatgaggttagttgataa 2338859  T
Q  558 ggcacaacaatttgatacggaaagaatagacggtgcagggataaa 602  Q
    || | | |||||||| | |||||||| ||| |||||| |||||||    
T  2338860 ggtagaccaatttgaaatggaaagaaaagatggtgcaaggataaa 2338904  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 629 - 682
Target Start/End: Original strand, 2338946 - 2338999
Alignment:
Q  629 ggcttcaacaaagaatggcacaacatgcatccatgagacctaatttcccacaga 682  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  2338946 ggcttcagcaaagaatgccacaacatgcatccatgagacctaatttcccacaga 2338999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 2338903 - 2338944
Alignment:
Q  21 aaccgcattaaaagtgaggtggaaatgtatgcaagaaattta 62  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  2338903 aaccgcattaaaagtgagttcgaaatgtatgcaagaaattta 2338944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 878 - 916
Target Start/End: Original strand, 2339188 - 2339226
Alignment:
Q  878 gcaatggcttcacatacagctgctgttggaactccatct 916  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  2339188 gcaatggcttcacgtactgctgctgttggaactccatct 2339226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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