View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_low_32 (Length: 288)
Name: NF13715_low_32
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_low_32 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold1804 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 20933125 - 20933403
Alignment:
| Q |
10 |
aagaatatcaagagcgagggatatttgctcaaactttggacccagttgagcactttaacaatattcttctatcattatttccagaaaatgagaaggaaaa |
109 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20933125 |
aagaaaatcaagagcgagggatacttgctcaaactttggacccagttgagtactttaacaatattcttctatcattatttccagaaaatgagaatgaaaa |
20933224 |
T |
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| Q |
110 |
tattagctttgattcagtttgtcaatctgacaaaaataaaaagatacaaagcaaatggtttagaatagagttcttgaatgatattaatagttacgtattt |
209 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| |
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| T |
20933225 |
tattagctttgattcaatttgtcaatctgacaaaaataaaaagatacaaagcaaatggtttacaacaaagttcttgaatgatattaatagttacgtattt |
20933324 |
T |
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| Q |
210 |
caaaccataaattgatatttaaagttggatgtccaataataatgatgaggaacatagaccaagttgttgtgttgtacaa |
288 |
Q |
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| T |
20933325 |
caaaccataaattgatatttaaagttggatgtccaataataatgatgaggaacatagattaagttgttgtgttgtacaa |
20933403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 55369228 - 55369171
Alignment:
| Q |
204 |
gtatttcaaaccataaattgatatttaaagttggatgtccaataataatgatgaggaa |
261 |
Q |
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| T |
55369228 |
gtattccaaaccataaattgagatttaaagttggatgtccagttatgttgatgaggaa |
55369171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 20778045 - 20777986
Alignment:
| Q |
205 |
tatttcaaaccataaattgatatttaaagttggatgtccaataataatgatgaggaacat |
264 |
Q |
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| T |
20778045 |
tatttcaaaccacaagttgagatttaaagttggatgtccagttatgttgatgaggaacat |
20777986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1804 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold1804
Description:
Target: scaffold1804; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 25 - 288
Target Start/End: Complemental strand, 1345 - 1082
Alignment:
| Q |
25 |
gagggatatttgctcaaactttggacccagttgagcactttaacaatattcttctatcattatttccagaaaatgagaaggaaaatattagctttgattc |
124 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1345 |
gagggatgcttgctcaaactttggacccagttgagcactttatcaatattcttctatcattatttccagaaaatgagaaggaaaatattagctttgattc |
1246 |
T |
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| Q |
125 |
agtttgtcaatctgacaaaaataaaaagatacaaagcaaatggtttagaatagagttcttgaatgatattaatagttacgtatttcaaaccataaattga |
224 |
Q |
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| T |
1245 |
agtttttcaatctgaaaaaaataaaaagatacaaagcaaatggtttacaacaaagttcttgaatgatattaatagttacgtatttcaaaccataaattga |
1146 |
T |
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| Q |
225 |
tatttaaagttggatgtccaataataatgatgaggaacatagaccaagttgttgtgttgtacaa |
288 |
Q |
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| T |
1145 |
tatttaaagttggatgtccaataataatgatgaggaacatagactaagttgttgtgttgtacaa |
1082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 26373439 - 26373607
Alignment:
| Q |
16 |
atcaagagcgagggatatttgctcaaactttggacccagttgagcactttaacaatattcttctatcattatttccagaaaatgagaaggaaaatattag |
115 |
Q |
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||||||||| | ||||| ||||||||| |||| | | | |||||||||||||||||||| ||||||| || ||||| ||||| ||||||| ||||||||| |
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| T |
26373439 |
atcaagagcaaaggatacttgctcaaaatttgaatcaaattgagcactttaacaatattattctatcgttgtttccggaaaacgagaagggaaatattag |
26373538 |
T |
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| Q |
116 |
ctttgattcagtttgtcaatctgacaaaaataaaaagatacaaagcaaatggtttagaatagagttctt |
184 |
Q |
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| T |
26373539 |
ctttgattaagtttgtcaatctaaccaaaataaaaagctacaaagcaaatagttttcaatagagttctt |
26373607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 173 - 288
Target Start/End: Original strand, 26373707 - 26373818
Alignment:
| Q |
173 |
aatagagttcttgaatgatattaatagttacgtatttcaaaccataaattgatatttaaagttggatgtccaataataatgatgaggaacatagaccaag |
272 |
Q |
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| T |
26373707 |
aatagagttcttgaatgatattaaca----cgcatttcaaaccacaaattgagatttaaagttggatgttcaataataatgatgaggaacatagaccaag |
26373802 |
T |
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| Q |
273 |
ttgttgtgttgtacaa |
288 |
Q |
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|||||||||| |||| |
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| T |
26373803 |
gtgttgtgttgcacaa |
26373818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 26367754 - 26367820
Alignment:
| Q |
204 |
gtatttcaaaccataaattgatatttaaagttggatgtccaataataatgatgaggaacatagacca |
270 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| | || |||||||||| || ||||| |
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| T |
26367754 |
gtattccaaaccataaattgatatttaaagttggatgtccagttatgttgatgaggaatattgacca |
26367820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 20108255 - 20108322
Alignment:
| Q |
205 |
tatttcaaaccataaattgatatttaaagttggatgtccaataataatgatgaggaacatagaccaag |
272 |
Q |
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|||||||||||| || || | ||||||||||||||||||| | ||| ||||||||||||| ||||||| |
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| T |
20108255 |
tatttcaaaccacaagttaagatttaaagttggatgtccagttatattgatgaggaacattgaccaag |
20108322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 3571594 - 3571660
Alignment:
| Q |
204 |
gtatttcaaaccataaattgatatttaaagttggatgtccaataataatgatgaggaacatagacca |
270 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||| | || |||||||||| || ||||| |
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| T |
3571594 |
gtattccaaaccataaattgagatttaaagttggatgtccagttatgttgatgaggaatattgacca |
3571660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 1364313 - 1364379
Alignment:
| Q |
205 |
tatttcaaaccataaattgatatttaaagttggatgtccaataataatgatgaggaacatagaccaa |
271 |
Q |
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|||||||||||| || |||| ||||||||||||| ||||||| || ||||||||||||| |||||| |
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| T |
1364313 |
tatttcaaaccacaagttgagatttaaagttggacgtccaattatgttgatgaggaacattgaccaa |
1364379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 42032389 - 42032330
Alignment:
| Q |
205 |
tatttcaaaccataaattgatatttaaagttggatgtccaataataatgatgaggaacat |
264 |
Q |
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|||||||||||| || |||| ||||||||||||||||||| | || ||||||||||||| |
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| T |
42032389 |
tatttcaaaccacaagttgagatttaaagttggatgtccagttatgttgatgaggaacat |
42032330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 8360388 - 8360447
Alignment:
| Q |
205 |
tatttcaaaccataaattgatatttaaagttggatgtccaataataatgatgaggaacat |
264 |
Q |
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|||||||||||| || |||| ||||||||||||||||||| | || ||||||||||||| |
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| T |
8360388 |
tatttcaaaccacaagttgagatttaaagttggatgtccagttatgttgatgaggaacat |
8360447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 25089218 - 25089277
Alignment:
| Q |
205 |
tatttcaaaccataaattgatatttaaagttggatgtccaataataatgatgaggaacat |
264 |
Q |
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|||||||||||| || |||| ||||||||||||||||||| | || ||||||||||||| |
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| T |
25089218 |
tatttcaaaccacaagttgagatttaaagttggatgtccatttatgttgatgaggaacat |
25089277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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