View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_low_33 (Length: 276)
Name: NF13715_low_33
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 25636067 - 25635801
Alignment:
| Q |
1 |
gatttcttggaacagtggagacaattctttcaaccttatcatctcatcattgttcaagatggtgatccttcaaaagtcatcaaagtccctgaaggatttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25636067 |
gatttcttggaacagtggagacaattctttcaaccttatcatctcatcattgttcaagatggtgatccttcaaaagtcatcaaagtccctgaaggatttg |
25635968 |
T |
|
| Q |
101 |
actatgaactttataaccgtaacgatattaaccgaattttgggtcctaaggcttcttgcatttcattcaaagactctgcttgtcgttgctttggtttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25635967 |
actatgaactttataaccgtaacgatattaaccgaattttgggtcctaaggcttcttgcatttcattcaaagactctgcttgtcgttgctttggtttcat |
25635868 |
T |
|
| Q |
201 |
tgtatcaaagaagaagtatatctttactattgatgatgattgctttgtaagttttcttcatctctct |
267 |
Q |
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| T |
25635867 |
tgtttcaaagaagaagtatatctttactattgatgatgattgctttgtatgtcttcttcatctctct |
25635801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 5020120 - 5019880
Alignment:
| Q |
15 |
gtggagacaattctttcaaccttatcatctcatcattgttcaagatggtgatccttcaaaagtcatcaaagtccctgaaggatttgactatgaactttat |
114 |
Q |
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| T |
5020120 |
gtggaggccattctttgagccttatcatctcatcattgttcaagatggtgacccttcaaaaaccatcaatgttcctcaaggttttgattatgagctttat |
5020021 |
T |
|
| Q |
115 |
aaccgtaacgatattaaccgaattttgggtcctaaggcttcttgcatttcattcaaagactctgcttgtcgttgctttggtttcattgtatcaaagaaga |
214 |
Q |
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| T |
5020020 |
aaccgtaatgatattaacaggattcttggtccaaaagctagctgtatctcattcaaggattctgcatgtcgttgctttggttatatggtttctaagaaga |
5019921 |
T |
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| Q |
215 |
agtatatctttactattgatgatgattgctttgtaagtttt |
255 |
Q |
| |
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||||||||| ||| |||||||||||||||||||| |||||| |
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| T |
5019920 |
agtatatctataccattgatgatgattgctttgtgagtttt |
5019880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 255
Target Start/End: Original strand, 20176923 - 20177141
Alignment:
| Q |
37 |
tatcatctcatcattgttcaagatggtgatccttcaaaagtcatcaaagtccctgaaggatttgactatgaactttataaccgtaacgatattaaccgaa |
136 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| || || || || ||||| || ||||| ||||| || | | |
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| T |
20176923 |
tatcatctcatcattgttcaagatggtgacccttcaaaagtcatcaaagttcctcaaggtttcgattacgagctttacaatcgtaatgatatcaatagga |
20177022 |
T |
|
| Q |
137 |
ttttgggtcctaaggcttcttgcatttcattcaaagactctgcttgtcgttgctttggtttcattgtatcaaagaagaagtatatctttactattgatga |
236 |
Q |
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| ||||||||||| |||||||| || || || || || |||||||||||||||||||||| || || || |||||||||||||| | ||| |||||||| |
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| T |
20177023 |
tcttgggtcctaaagcttcttgtatctcctttaaggattctgcttgtcgttgctttggttatatggtttctaagaagaagtatatttataccattgatga |
20177122 |
T |
|
| Q |
237 |
tgattgctttgtaagtttt |
255 |
Q |
| |
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||||||||||||||||||| |
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| T |
20177123 |
tgattgctttgtaagtttt |
20177141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 5581817 - 5581563
Alignment:
| Q |
1 |
gatttcttggaacagtggagacaattctttcaaccttatcatctcatcattgttcaagatggtgatccttcaaaagtcatcaaagtccctgaaggatttg |
100 |
Q |
| |
|
|||||||||||| |||||| | || ||| ||||||||||| | |||||||||||||||||||| ||||||||| || || || || || |||| |
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| T |
5581817 |
gatttcttggaaatgtggaggccatattttgaaccttatcatttgatcattgttcaagatggtgacccttcaaaaactattaaggttccacctggttttg |
5581718 |
T |
|
| Q |
101 |
actatgaactttataaccgtaacgatattaaccgaattttgggtcctaaggcttcttgcatttcattcaaagactctgcttgtcgttgctttggtttcat |
200 |
Q |
| |
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| |||||||||||||| | || |||||||| || | ||||||| ||||||||||||||||||||| |||||||| |||||||||||||||| ||| |
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| T |
5581717 |
attatgaactttataataggaatgatattaataagcttcttggtcctagggcttcttgcatttcattcaaggactctgcatgtcgttgctttggttacat |
5581618 |
T |
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| Q |
201 |
tgtatcaaagaagaagtatatctttactattgatgatgattgctttgtaagtttt |
255 |
Q |
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|| || ||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
5581617 |
ggtttctaagaagaagtacatcttcactattgatgatgattgctttgtaagtttt |
5581563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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