View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13715_low_34 (Length: 273)

Name: NF13715_low_34
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13715_low_34
NF13715_low_34
[»] chr5 (14 HSPs)
chr5 (1-272)||(37428837-37429108)
chr5 (68-158)||(37413107-37413197)
chr5 (68-165)||(37400729-37400826)
chr5 (74-249)||(37640000-37640175)
chr5 (84-165)||(37594536-37594617)
chr5 (68-165)||(37711836-37711933)
chr5 (68-244)||(37435840-37436016)
chr5 (68-165)||(37392743-37392840)
chr5 (84-249)||(37702796-37702961)
chr5 (5-175)||(37382123-37382293)
chr5 (68-165)||(37696933-37697030)
chr5 (68-165)||(37533312-37533409)
chr5 (68-165)||(37824107-37824204)
chr5 (213-249)||(37594452-37594488)
[»] chr3 (1 HSPs)
chr3 (68-249)||(14553238-14553419)
[»] chr4 (1 HSPs)
chr4 (68-165)||(16842727-16842824)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 37429108 - 37428837
Alignment:
Q  1 tctcaatgataactaactcacagggtcaattggtgagttctctactagttcattgaattatctattcctctcgaataacaagttacatggtccttttcca 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429108 tctcaatgataaccaactcacagggtcaattggtgagttctctactagttcattgaattatctattcctctcgaataacaagttacatggtccttttcca 37429009  T
Q  101 aattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaatttttctaagtttaaattac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429008 aattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaatttttctaagtttaaattac 37428909  T
Q  201 ttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaagattgacttcatctcac 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  37428908 ttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccatctcac 37428837  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 37413107 - 37413197
Alignment:
Q  68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttga 158  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||    
T  37413107 ctctctaataacaagttacatggtcattttccaaattcaatatttaaattccaaaatcttacttacttaggtttgtcatcaacaaacttga 37413197  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 37400729 - 37400826
Alignment:
Q  68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 165  Q
    ||||| ||||||||  |||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| |||||    
T  37400729 ctctctaataacaacctacaaggtcattttccaaattcaatatttgaactccaaaatcttacttacttagatttgtcatcaacaaacttgagtggtgt 37400826  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 249
Target Start/End: Complemental strand, 37640175 - 37640000
Alignment:
Q  74 aataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagact 173  Q
    ||||||||  |||| |||| ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||| ||||| || || |    
T  37640175 aataacaacctacaaggtcattttccaaattcaatatttcaactccaaaatcttacttacttagatttgtcatcaacaaacttgagtggtgttgtggatt 37640076  T
Q  174 tttacaatttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttga 249  Q
    || || | ||||| || || ||   ||| | || ||| |||||||| || ||||| ||||||||||||||| ||||    
T  37640075 ttcaccaattttcaaaattaaacaaactaagttcccttgatctttcccataatagttttctttctatcaacattga 37640000  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 37594617 - 37594536
Alignment:
Q  84 tacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 165  Q
    ||||||||| ||||||||||||||||||| || ||||||||||  |||||||| |||||||||||||||||||||| |||||    
T  37594617 tacatggtcattttccaaattcaatatttcaactccaaaatctatcttacttaactttgtcatcaaccaacttgagtggtgt 37594536  T

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Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 37711933 - 37711836
Alignment:
Q  68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 165  Q
    ||||| ||||||||  |||| |||| ||||||||||||||||||| || ||||||||||||||||||||  |||||||||||| |||||||| |||||    
T  37711933 ctctctaataacaacctacaaggtcattttccaaattcaatatttcaactccaaaatcttacttacttatatttgtcatcaacaaacttgagtggtgt 37711836  T

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Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 244
Target Start/End: Complemental strand, 37436016 - 37435840
Alignment:
Q  68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtag 167  Q
    ||||| ||||||||  || | |||| |||| |||||||||||||| || |||||||||||||| | |||| |||||||||||| |||||||| ||||| |    
T  37436016 ctctcaaataacaacctagaaggtcatttttcaaattcaatatttcaactccaaaatcttactgaattagatttgtcatcaacaaacttgagtggtgttg 37435917  T
Q  168 tagacttttacaatttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaac 244  Q
    | || ||| || | ||||| ||  |||||   || | | ||||| |||||||||||||||| |||||||||||||||    
T  37435916 tggattttcaccaattttcaaaacttaaaaatctaattctcctcaatctttcgcacaatagttttctttctatcaac 37435840  T

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Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 37392743 - 37392840
Alignment:
Q  68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 165  Q
    ||||| ||||||||  ||||||||| |||||||||||||||||||||| |||||||||||||  |||||| |||||| ||||| ||||| || |||||    
T  37392743 ctctcaaataacaacctacatggtcattttccaaattcaatatttgaactccaaaatcttaccaacttagatttgtcttcaacaaacttaagtggtgt 37392840  T

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Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 37702961 - 37702796
Alignment:
Q  84 tacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaattt 183  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||||  |||||| |||||| ||||| |||||||| ||||| || || ||| || | ||    
T  37702961 tacatggtcattttccaaattcaatatatgaactccaaaatcttaccaacttagatttgtcgtcaacaaacttgagtggtgtcgtggattttcaccaatt 37702862  T
Q  184 ttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttga 249  Q
    ||| || || |||  ||| | || ||||  |||||| |||||||| ||| ||||||||||| ||||    
T  37702861 ttcaaaattaaaaaaactaaattccctcattctttcacacaatagttttatttctatcaacattga 37702796  T

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Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 37382123 - 37382293
Alignment:
Q  5 aatgataactaactcacagggtcaattggtgagttctctactagttcattgaattatctattcctctcgaataacaagttacatggtccttttccaaatt 104  Q
    ||||| ||| |||| ||||| || |||||||| ||||| |||  ||| ||||  |||||||| ||||| ||||||||  || | |||  |||||||||||    
T  37382123 aatgacaaccaactaacaggttcgattggtgaattctcgacttattccttgatatatctatttctctctaataacaacataaaaggtgattttccaaatt 37382222  T
Q  105 caatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttt 175  Q
    |||||| | || | |||||||||  | ||||||  |||||||||||||||||||| ||||| || ||||||    
T  37382223 caatatataaattacaaaatctttttgacttaggattgtcatcaaccaacttgagtggtgttgtggacttt 37382293  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 37697030 - 37696933
Alignment:
Q  68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 165  Q
    ||||| ||||||||  |||| |||| ||||||||||||||||||| || ||||||| |||||  | |||  ||||||||||||||||||||| |||||    
T  37697030 ctctctaataacaacctacaaggtcattttccaaattcaatatttcaactccaaaaccttaccgagttatatttgtcatcaaccaacttgagtggtgt 37696933  T

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Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 37533409 - 37533312
Alignment:
Q  68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 165  Q
    ||||| ||||||||  |||| |||| ||||||||||||||||||| || |||||||||||||  |||||  ||||||||| || ||||| || |||||    
T  37533409 ctctctaataacaacctacaaggtcattttccaaattcaatatttcaactccaaaatcttaccgacttatatttgtcatccacaaacttaagtggtgt 37533312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 37824204 - 37824107
Alignment:
Q  68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 165  Q
    ||||| ||||||||  |||  |||| ||||||||||||||||||| || |||||||||||||  | |||  |||||||||||| |||||||| |||||    
T  37824204 ctctctaataacaacctacgaggtcattttccaaattcaatatttcaactccaaaatcttaccgagttaattttgtcatcaacaaacttgagtggtgt 37824107  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 37594488 - 37594452
Alignment:
Q  213 atctttcgcacaatagctttctttctatcaactttga 249  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  37594488 atctttcacacaatagttttctttctatcaactttga 37594452  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 249
Target Start/End: Complemental strand, 14553419 - 14553238
Alignment:
Q  68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtag 167  Q
    ||||| ||||||||  |||| |||| |||||||||||||||||||||| |||||||||||||  |||||  ||||||||| || |||||||| ||||| |    
T  14553419 ctctcaaataacaacctacaaggtcattttccaaattcaatatttgaactccaaaatcttaccgacttatatttgtcatccacaaacttgagtggtgttg 14553320  T
Q  168 tagacttttacaatttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttga 249  Q
    | || ||| || | ||||| || || |||  ||| | || |||||||||||| |||||||| ||| ||||||||||| ||||    
T  14553319 tggattttcaccaattttcaaaattaaaaaaactaaattccctcgatctttcacacaatagttttatttctatcaacattga 14553238  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 16842727 - 16842824
Alignment:
Q  68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 165  Q
    ||||| ||||||||  |||| || | |||||||||||||||||||||| |||||||||||||   | ||| ||| |||||||| |||||||| |||||    
T  16842727 ctctctaataacaacctacaaggccattttccaaattcaatatttgaactccaaaatcttaccgccctagatttatcatcaacaaacttgagtggtgt 16842824  T

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