View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_low_36 (Length: 260)
Name: NF13715_low_36
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 45310127 - 45309893
Alignment:
| Q |
10 |
catcatcatcatatattaaaatttacaattaagtgaagtggattgaaaatattattgtttctacttacagtggtgctagaaagcacacaaaggatgaaat |
109 |
Q |
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| T |
45310127 |
catcatcatcatatattaaaatttacaattaagtgaagtggattgaaaatattattgtttctacttacagtggtgctagaaagcacacaaaggatgaaat |
45310028 |
T |
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| Q |
110 |
gttgcctagaactccaaaggcaaaagatagatgactgtggtgggatgacatggtaattgttatgatcttatgaaaactctttcttnnnnnnnnnnnnnga |
209 |
Q |
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| T |
45310027 |
gttgcctagaactccaaaggcaaaagatagatgactgtggtgggacgacatggtaattgttatgatcttatgaaaactctttctttctctctctctctga |
45309928 |
T |
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| Q |
210 |
atagtcccttgtgagaagggagagaatgaaggttt |
244 |
Q |
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| T |
45309927 |
atagtcccttgtgagaagggagagaaggaaggttt |
45309893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 45292220 - 45292170
Alignment:
| Q |
102 |
gatgaaatgttgcctagaactccaaaggcaaaagatagatgactgtggtgg |
152 |
Q |
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| T |
45292220 |
gatgtaatgttgcctagaactccaaatgcaaatgatagatgactgtggtgg |
45292170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 45292288 - 45292223
Alignment:
| Q |
14 |
atcatcatatattaaaatt-tacaattaagtgaagtggattgaaaatattattgtttctacttacag |
79 |
Q |
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| T |
45292288 |
atcatcatatattaaaaacatacaataaagtgaagtggattgaaaata-tattgtttctacttacag |
45292223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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