View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13715_low_37 (Length: 255)
Name: NF13715_low_37
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 52074721 - 52074500
Alignment:
| Q |
1 |
ttatataacgaaaagtgaatgaaagagaagaaaataaagcaaaacaaactgagcgaagcttcttttattattctctcgaatcgatcgatccatccacctt |
100 |
Q |
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| T |
52074721 |
ttatataacgaaaagtgaatgaaagagaagaaaataaagcaaaacaaactgagcgaagcttcttttattattctctcgaatcgatcgatccat------- |
52074629 |
T |
|
| Q |
101 |
ttaatttatttttctctatctgctctttgtctttgtctgttttccgttattttattcattcattcgtttatgcgcttaatttcacacccttaggtgtgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52074628 |
-----ttatttttctctatctgctctttgtctttgtctgttttccgttattttattcattcattcgtttatgcgcttaatttcacacccttaggtgtgtg |
52074534 |
T |
|
| Q |
201 |
ccacgtgtctatttttatcgcacccctccctccc |
234 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
52074533 |
ccacgtgtctatttttatcacacccctccctccc |
52074500 |
T |
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