View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13715_low_38 (Length: 238)

Name: NF13715_low_38
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13715_low_38
NF13715_low_38
[»] chr3 (2 HSPs)
chr3 (18-238)||(675579-675799)
chr3 (101-157)||(32797818-32797874)
[»] chr4 (3 HSPs)
chr4 (18-238)||(19141919-19142139)
chr4 (18-238)||(41499990-41500210)
chr4 (26-226)||(43405499-43405698)
[»] chr1 (8 HSPs)
chr1 (18-238)||(22581642-22581862)
chr1 (18-238)||(4816144-4816364)
chr1 (18-238)||(34059713-34059933)
chr1 (18-149)||(33052523-33052654)
chr1 (137-228)||(8265685-8265775)
chr1 (141-228)||(10069204-10069291)
chr1 (141-228)||(27927883-27927971)
chr1 (111-221)||(18395629-18395740)
[»] chr5 (3 HSPs)
chr5 (18-238)||(29638759-29638979)
chr5 (98-231)||(10353888-10354021)
chr5 (28-238)||(38475835-38476046)
[»] scaffold0010 (1 HSPs)
scaffold0010 (18-238)||(250276-250496)
[»] chr7 (2 HSPs)
chr7 (18-185)||(39051247-39051412)
chr7 (98-185)||(31200674-31200761)
[»] scaffold0049 (1 HSPs)
scaffold0049 (18-149)||(46565-46696)
[»] chr8 (1 HSPs)
chr8 (90-185)||(3694144-3694239)
[»] chr2 (2 HSPs)
chr2 (98-225)||(40142183-40142310)
chr2 (97-218)||(30866281-30866402)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 675579 - 675799
Alignment:
Q  18 gtattcagtttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcgatgccatcttctgaaatcattgaataatcaactcatcat 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  675579 gtattcaatttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcggtgccatcttctgaaatcgttgaataatcaactcatcat 675678  T
Q  118 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  675679 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcat 675778  T
Q  218 agcagaaaaggctcgttcaac 238  Q
    |||||||||||||||||||||    
T  675779 agcagaaaaggctcgttcaac 675799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 32797818 - 32797874
Alignment:
Q  101 aataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgag 157  Q
    ||||||||| |||| ||||| ||||||   ||||||||||||||||||| |||||||    
T  32797818 aataatcaattcattatcaactttgtcgaacacatctctctcaatataattcacgag 32797874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 19142139 - 19141919
Alignment:
Q  18 gtattcagtttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcgatgccatcttctgaaatcattgaataatcaactcatcat 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  19142139 gtattcaatttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcggtgccatcttctgaaatcgttgaataatcaactcatcat 19142040  T
Q  118 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19142039 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcat 19141940  T
Q  218 agcagaaaaggctcgttcaac 238  Q
    ||||||||| |||||||||||    
T  19141939 agcagaaaatgctcgttcaac 19141919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 41499990 - 41500210
Alignment:
Q  18 gtattcagtttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcgatgccatcttctgaaatcattgaataatcaactcatcat 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  41499990 gtattcaatttacaatgtactcaaaaaacttcatccattctttacaaatgtcccttacgcggtgccatcttctgaaatcgttgaataatcaactcatcat 41500089  T
Q  118 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41500090 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcat 41500189  T
Q  218 agcagaaaaggctcgttcaac 238  Q
    |||||||||||||||||||||    
T  41500190 agcagaaaaggctcgttcaac 41500210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 43405698 - 43405499
Alignment:
Q  26 tttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcgatgccatcttctgaaatcattgaataatcaactcatcatcaattttg 125  Q
    ||||||||||||| |||||||| |||| ||||||| ||||||||||| ||| | || ||| |||||||||| ||||||||||||||||||||||||||||    
T  43405698 tttacaatgtactaaaaaaactccatctattctttgcaaatgtccccgacggggtgtcatgttctgaaatcgttgaataatcaactcatcatcaattttg 43405599  T
Q  126 tccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaa 225  Q
    || |||| |||||||||||||||||| ||| ||||||||||||| |||||||||||||||  |||||||||||||| ||| ||  | |||||||||||||    
T  43405598 tcggccatatctctctcaatataagttacgggacaatcattcatgcaatcatctcccattttattacgcaatctagtctttac-ttattcatagcagaaa 43405500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 22581862 - 22581642
Alignment:
Q  18 gtattcagtttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcgatgccatcttctgaaatcattgaataatcaactcatcat 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  22581862 gtattcaatttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcggtgccatcttctgaaatcgttgaataatcaactcatcat 22581763  T
Q  118 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22581762 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatcccatcatctcccattcgattacgcaatctagacttcacaatcttcat 22581663  T
Q  218 agcagaaaaggctcgttcaac 238  Q
    |||||||||||||||||||||    
T  22581662 agcagaaaaggctcgttcaac 22581642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 4816364 - 4816144
Alignment:
Q  18 gtattcagtttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcgatgccatcttctgaaatcattgaataatcaactcatcat 117  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||    
T  4816364 gtattcaatttacaatgtactcaaaaaacttcatccattgtttacaaatgtcccctacgcggtgctatcttctgaaatcgttgaataatcaactcatcat 4816265  T
Q  118 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4816264 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcat 4816165  T
Q  218 agcagaaaaggctcgttcaac 238  Q
    |||||||||||||||||||||    
T  4816164 agcagaaaaggctcgttcaac 4816144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 34059933 - 34059713
Alignment:
Q  18 gtattcagtttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcgatgccatcttctgaaatcattgaataatcaactcatcat 117  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  34059933 gtattcattttacaatgtattcaaaaaacttcatccattctttacaaatgtcccctacgcggtgccatcttctgaaatcgttgaataatcaactcatcat 34059834  T
Q  118 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcat 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34059833 caattttgtccgccacatctctctcaatataagttacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcat 34059734  T
Q  218 agcagaaaaggctcgttcaac 238  Q
    |||||||||||||||||||||    
T  34059733 agcagaaaaggctcgttcaac 34059713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 33052523 - 33052654
Alignment:
Q  18 gtattcagtttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcgatgccatcttctgaaatcattgaataatcaactcatcat 117  Q
    ||||||| ||| ||||||||| |||||||||||||||||||||||||||||| |||||||| |  ||| |||||||||  ||||||||||||||||||||    
T  33052523 gtattcaatttgcaatgtactaaaaaaacttcatccattctttacaaatgtctcctacgcggttgcatgttctgaaatagttgaataatcaactcatcat 33052622  T
Q  118 caattttgtccgccacatctctctcaatataa 149  Q
    |||| |||||| ||||||||||||||||||||    
T  33052623 caatcttgtccaccacatctctctcaatataa 33052654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 8265685 - 8265775
Alignment:
Q  137 tctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaagg 228  Q
    |||||||||||||||||| |||||||||||||| || ||||||  |||| |||||| ||||||||  ||||||| |||||||||| ||||||    
T  8265685 tctctcaatataagtcacaagacaatcattcattcattcatct-tcatttgattacacaatctagttttcacaaccttcatagcataaaagg 8265775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 10069291 - 10069204
Alignment:
Q  141 tcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaagg 228  Q
    |||||||||||||| ||||||||||||||||| |||||  |||||| |||||| ||||||   |||||||||||||| || |||||||    
T  10069291 tcaatataagtcactagacaatcattcatccattcatcctccattcaattacgtaatctatttttcacaatcttcattgccgaaaagg 10069204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 27927971 - 27927883
Alignment:
Q  141 tcaatataagtcacgagacaatcattcatccaatca-tctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaagg 228  Q
    |||||||||||||| ||||||||||||||| | ||| || |||||||||||||| ||||||    |||||||||||||||| |||||||    
T  27927971 tcaatataagtcaccagacaatcattcatctagtcattcccccattcgattacgtaatctacttgtcacaatcttcatagccgaaaagg 27927883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 18395740 - 18395629
Alignment:
Q  111 tcatcatcaattttgtccgccacatctctctcaatat-aagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcaca 209  Q
    ||||||||||| |||||   ||||| ||||||||||| |||||||||||||||  |||||  | ||||||||||||  || |  |||| |||  ||||||    
T  18395740 tcatcatcaatgttgtcgaacacatatctctcaatataaagtcacgagacaattgttcattaattcatctcccattttataattcaatttagttttcaca 18395641  T
Q  210 atcttcatagca 221  Q
    ||||||||||||    
T  18395640 atcttcatagca 18395629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 29638979 - 29638759
Alignment:
Q  18 gtattcagtttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcgatgccatcttctgaaatcattgaataatcaactcatcat 117  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  29638979 gtattcagtttacaatgtattcaaaaaacttcatccattctttacaaatgtcccctacgcgtagccatcttctgaaatcgttgaataatcaactcatcat 29638880  T
Q  118 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcat 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29638879 caattttgtccgccacatctctctcaatataagtgacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcat 29638780  T
Q  218 agcagaaaaggctcgttcaac 238  Q
    |||||||||||||||||||||    
T  29638779 agcagaaaaggctcgttcaac 29638759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 10354021 - 10353888
Alignment:
Q  98 ttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaat 197  Q
    |||||| |||| ||||| |||||| ||||    ||||||| |||||||||||| ||| ||||||||||||||||| |||||| | |||||||||| ||||    
T  10354021 ttgaatgatcacctcattatcaatgttgttgaacacatctttctcaatataagccactagacaatcattcatccattcatctgctattcgattacacaat 10353922  T
Q  198 ctagacttcacaatcttcatagcagaaaaggctc 231  Q
     ||  |||||||| ||||||||||||||||||||    
T  10353921 gtactcttcacaaacttcatagcagaaaaggctc 10353888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 38476046 - 38475835
Alignment:
Q  28 tacaatgtactcaaaaaacttcatc--cattctttacaaatgtcccctacgcgatgccatcttctgaaatcattgaataatcaactcatcatcaattttg 125  Q
    |||| ||||||||||| |||||||   ||| || ||||| ||  ||||||| | ||| || || ||||||| ||||||||||||||||| |||||  ||     
T  38476046 tacattgtactcaaaatacttcatatgcatactctacaattgctccctacgaggtgctatgttatgaaatcgttgaataatcaactcattatcaaccttt 38475947  T
Q  126 tccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaa 225  Q
    |    ||||||||||||||| |||||||| ||||| || |||||  | ||||  |||||| ||||| ||||| |   |||||||||||||||||||||||    
T  38475946 ttgaacacatctctctcaatgtaagtcacaagaca-tcgttcataaattcattccccatttgattaagcaatttgttcttcacaatcttcatagcagaaa 38475848  T
Q  226 aggctcgttcaac 238  Q
    | |||||||||||    
T  38475847 atgctcgttcaac 38475835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 250276 - 250496
Alignment:
Q  18 gtattcagtttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcgatgccatcttctgaaatcattgaataatcaactcatcat 117  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |   || || ||||||| ||||||||||||||||||||    
T  250276 gtattcaatttacaatgtactcaaaaaacatcatccattctttacgaatgtcccctacgcggttttatgttatgaaatcgttgaataatcaactcatcat 250375  T
Q  118 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  250376 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatttgattacacaatctagacttcacaatcttcat 250475  T
Q  218 agcagaaaaggctcgttcaac 238  Q
    |||||||| ||||||||||||    
T  250476 agcagaaatggctcgttcaac 250496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 39051247 - 39051412
Alignment:
Q  18 gtattcagtttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcgatgccatcttctgaaatcattgaataatcaactcatcat 117  Q
    ||||||| |||| ||| ||||||||||||| ||| |||||||||||||||  ||||||||| |  ||| || ||||||| ||||||||||||||||||||    
T  39051247 gtattcaatttaaaatatactcaaaaaactccattcattctttacaaatg--ccctacgcggttgcatgttatgaaatcgttgaataatcaactcatcat 39051344  T
Q  118 caattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 185  Q
    |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  39051345 caatcttgtccgccacatctctctcaatataagtcacaagataatcattcatccattcatctcccatt 39051412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 31200761 - 31200674
Alignment:
Q  98 ttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 185  Q
    ||||||||||||||||| |||||| |||||   || |||||| | |||||||||||| ||||||| ||||||||| | |||| |||||    
T  31200761 ttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatt 31200674  T

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Target: scaffold0049 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 46696 - 46565
Alignment:
Q  18 gtattcagtttacaatgtactcaaaaaacttcatccattctttacaaatgtcccctacgcgatgccatcttctgaaatcattgaataatcaactcatcat 117  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||  |  ||| |||||||||||||||||||||||||||||||    
T  46696 gtattcaatttacaatgtactcaaaaaactccatccattctttacaaatgtcccctacgcagttgcatgttctgaaatcattgaataatcaactcatcat 46597  T
Q  118 caattttgtccgccacatctctctcaatataa 149  Q
    |||| ||||||||||| |||||||||||||||    
T  46596 caatcttgtccgccacttctctctcaatataa 46565  T

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Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 90 - 185
Target Start/End: Original strand, 3694144 - 3694239
Alignment:
Q  90 tgaaatcattgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt 185  Q
    ||||||| |||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  3694144 tgaaatcgttgaataatcaattcatcgtcaatcttgtccgccacatctctctcaatataagtcacaagacaatcattcatccattcatctcccatt 3694239  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 40142310 - 40142183
Alignment:
Q  98 ttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaat 197  Q
    ||||||||||||||||  |||||| |||||   ||||   |||||||||||||||| ||||||||| |||||||| |||||||||||| ||||| |||||    
T  40142310 ttgaataatcaactcacgatcaatgttgtctaacacactcctctcaatataagtcatgagacaatcgttcatccactcatctcccatttgattatgcaat 40142211  T
Q  198 ctagacttcacaatcttcatagcagaaa 225  Q
     ||| ||| | ||||||||||| |||||    
T  40142210 atagtcttgaaaatcttcatagtagaaa 40142183  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 30866281 - 30866402
Alignment:
Q  97 attgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaa 196  Q
    ||||||||||||| |||| ||||| ||| |    ||||||||||||||| |||||||  |||||||| |||||  | ||| | | |||| ||||||||||    
T  30866281 attgaataatcaattcattatcaacttttttgaacacatctctctcaatgtaagtcataagacaatcgttcataaattcacccctcatttgattacgcaa 30866380  T
Q  197 tctagacttcacaatcttcata 218  Q
    | |   ||||||||||||||||    
T  30866381 tattctcttcacaatcttcata 30866402  T

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