View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13715_low_4 (Length: 610)

Name: NF13715_low_4
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13715_low_4
NF13715_low_4
[»] chr3 (26 HSPs)
chr3 (31-530)||(44085096-44085608)
chr3 (436-556)||(48303938-48304058)
chr3 (436-560)||(49096319-49096442)
chr3 (436-556)||(51258350-51258469)
chr3 (445-556)||(45244336-45244447)
chr3 (477-584)||(47123027-47123132)
chr3 (477-584)||(47130393-47130498)
chr3 (477-585)||(34821529-34821635)
chr3 (446-580)||(3352168-3352301)
chr3 (478-560)||(28872946-28873028)
chr3 (443-579)||(47740031-47740165)
chr3 (477-556)||(3937335-3937414)
chr3 (436-584)||(38977840-38977986)
chr3 (443-554)||(50716201-50716312)
chr3 (443-554)||(50796535-50796646)
chr3 (477-539)||(33438486-33438548)
chr3 (477-556)||(501274-501353)
chr3 (477-548)||(39149765-39149835)
chr3 (475-518)||(42936685-42936728)
chr3 (514-549)||(42937115-42937150)
chr3 (441-556)||(47301966-47302081)
chr3 (477-584)||(51540747-51540854)
chr3 (479-584)||(3902941-3903044)
chr3 (511-556)||(42936616-42936661)
chr3 (443-515)||(34821442-34821514)
chr3 (443-584)||(35141998-35142134)
[»] chr6 (12 HSPs)
chr6 (436-534)||(24604454-24604552)
chr6 (436-584)||(7412749-7412895)
chr6 (436-541)||(1945621-1945726)
chr6 (443-560)||(17264353-17264470)
chr6 (477-548)||(14587693-14587764)
chr6 (477-556)||(23406743-23406822)
chr6 (483-556)||(33413485-33413558)
chr6 (443-540)||(4508401-4508498)
chr6 (443-556)||(5699505-5699618)
chr6 (443-536)||(32035080-32035173)
chr6 (477-548)||(3717416-3717487)
chr6 (443-540)||(2813323-2813422)
[»] chr8 (14 HSPs)
chr8 (436-560)||(41530612-41530737)
chr8 (441-549)||(36404252-36404359)
chr8 (479-584)||(42281029-42281132)
chr8 (443-584)||(8885552-8885691)
chr8 (477-559)||(27928074-27928156)
chr8 (443-548)||(44106178-44106283)
chr8 (477-560)||(28916726-28916809)
chr8 (443-556)||(3094628-3094741)
chr8 (480-585)||(9073424-9073527)
chr8 (496-556)||(21004337-21004397)
chr8 (477-560)||(34853273-34853355)
chr8 (477-556)||(37248505-37248584)
chr8 (475-556)||(16310546-16310627)
chr8 (479-556)||(31520027-31520104)
[»] chr5 (25 HSPs)
chr5 (438-559)||(27212614-27212735)
chr5 (477-584)||(31929239-31929343)
chr5 (477-584)||(40620123-40620228)
chr5 (443-585)||(28083477-28083617)
chr5 (446-584)||(39524659-39524795)
chr5 (477-584)||(38692915-38693021)
chr5 (477-556)||(33487519-33487598)
chr5 (446-539)||(26190400-26190493)
chr5 (436-508)||(23269298-23269370)
chr5 (436-554)||(15799136-15799254)
chr5 (436-534)||(38871602-38871700)
chr5 (436-582)||(20891497-20891642)
chr5 (436-548)||(36359678-36359789)
chr5 (477-540)||(12465239-12465302)
chr5 (477-548)||(38372226-38372297)
chr5 (436-556)||(38640629-38640751)
chr5 (443-584)||(6156614-6156753)
chr5 (492-549)||(37095062-37095119)
chr5 (436-556)||(26319027-26319146)
chr5 (436-508)||(28445503-28445575)
chr5 (477-584)||(37183915-37184020)
chr5 (477-573)||(43388202-43388298)
chr5 (443-537)||(25746954-25747047)
chr5 (443-556)||(4064819-4064932)
chr5 (437-518)||(8032218-8032299)
[»] chr1 (20 HSPs)
chr1 (436-556)||(43319288-43319408)
chr1 (436-584)||(32817703-32817849)
chr1 (436-556)||(6223829-6223950)
chr1 (436-584)||(40908026-40908172)
chr1 (477-584)||(52744950-52745055)
chr1 (483-556)||(27794802-27794875)
chr1 (478-585)||(15069976-15070081)
chr1 (443-547)||(44573195-44573299)
chr1 (477-580)||(45568009-45568111)
chr1 (514-584)||(49677414-49677482)
chr1 (477-535)||(45046983-45047041)
chr1 (436-508)||(800894-800966)
chr1 (477-508)||(9446187-9446218)
chr1 (477-560)||(23442681-23442764)
chr1 (477-556)||(33611543-33611622)
chr1 (510-584)||(38885160-38885232)
chr1 (443-584)||(40650774-40650914)
chr1 (478-584)||(42545889-42545992)
chr1 (443-556)||(18583643-18583756)
chr1 (443-540)||(41584769-41584866)
[»] chr2 (15 HSPs)
chr2 (437-554)||(9847513-9847630)
chr2 (445-584)||(39447078-39447220)
chr2 (438-583)||(25715285-25715430)
chr2 (444-556)||(34517048-34517159)
chr2 (443-584)||(45153885-45154024)
chr2 (443-560)||(25217884-25218001)
chr2 (477-585)||(33452571-33452677)
chr2 (477-585)||(44465856-44465962)
chr2 (443-584)||(17474893-17475034)
chr2 (443-556)||(36949039-36949152)
chr2 (480-556)||(5507363-5507439)
chr2 (443-584)||(32187963-32188103)
chr2 (436-580)||(15995200-15995343)
chr2 (436-508)||(38066760-38066832)
chr2 (477-580)||(41510556-41510658)
[»] chr4 (24 HSPs)
chr4 (436-556)||(3703342-3703462)
chr4 (443-584)||(19835449-19835588)
chr4 (436-556)||(38416520-38416640)
chr4 (478-577)||(25491529-25491626)
chr4 (481-556)||(50392546-50392622)
chr4 (475-560)||(40703614-40703700)
chr4 (436-584)||(48319157-48319302)
chr4 (477-584)||(7931590-7931692)
chr4 (441-560)||(49396959-49397078)
chr4 (478-560)||(23523857-23523939)
chr4 (436-583)||(25752536-25752684)
chr4 (477-584)||(17933270-17933375)
chr4 (478-537)||(49002934-49002994)
chr4 (477-584)||(53894124-53894229)
chr4 (502-583)||(2506190-2506271)
chr4 (483-580)||(54631602-54631697)
chr4 (443-583)||(38536100-38536238)
chr4 (436-516)||(8106387-8106467)
chr4 (477-556)||(6228944-6229023)
chr4 (477-556)||(25539081-25539160)
chr4 (477-556)||(55052752-55052831)
chr4 (443-549)||(29822581-29822687)
chr4 (479-556)||(32441766-32441843)
chr4 (520-556)||(42660434-42660470)
[»] chr7 (22 HSPs)
chr7 (436-556)||(6467643-6467764)
chr7 (492-556)||(28349232-28349296)
chr7 (443-584)||(19225697-19225837)
chr7 (444-584)||(3936029-3936167)
chr7 (443-548)||(43737079-43737184)
chr7 (443-577)||(37518394-37518526)
chr7 (498-584)||(42877199-42877283)
chr7 (443-584)||(42925740-42925879)
chr7 (444-556)||(3304858-3304971)
chr7 (443-540)||(47202457-47202554)
chr7 (436-541)||(26555133-26555240)
chr7 (477-548)||(28230601-28230671)
chr7 (436-526)||(8154876-8154966)
chr7 (443-560)||(36468636-36468751)
chr7 (477-541)||(9151776-9151840)
chr7 (476-560)||(28346091-28346174)
chr7 (436-508)||(31985610-31985684)
chr7 (498-556)||(36629151-36629210)
chr7 (443-540)||(24042287-24042384)
chr7 (443-540)||(31643004-31643101)
chr7 (436-508)||(33574126-33574198)
chr7 (480-547)||(36408326-36408394)
[»] scaffold0182 (1 HSPs)
scaffold0182 (475-585)||(23043-23150)
[»] scaffold0137 (1 HSPs)
scaffold0137 (436-556)||(9589-9709)
[»] scaffold0010 (1 HSPs)
scaffold0010 (499-580)||(140533-140612)
[»] scaffold0508 (1 HSPs)
scaffold0508 (443-548)||(3494-3601)
[»] scaffold0027 (1 HSPs)
scaffold0027 (443-584)||(142062-142200)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 31 - 530
Target Start/End: Original strand, 44085096 - 44085608
Alignment:
Q  31 aggagatactcaaattgcagtcccatgtcccttgccttctacatttaaattaaagttataactgcttaacttcagaaaagaaaatttaatggtgttcaat 130  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  44085096 aggagatactcaaattgcagtcccatgtcccttgccttcta--tttaaattaaagttataactgcttaacttcagaaaagaaaatttattggtgttcagt 44085193  T
Q  131 tcaattttctatgcagcataataagtaaagatgtcctaccaagcctcgtctatttaaagcatcatttattgaggtaaactacggtggccgtttctctcat 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  44085194 tcaattttctatgcagcataataagtaaagatgtcctaccaagcctcgtctatttaaagcatcatttagtgaggtaaactacagtggccgtttctctcat 44085293  T
Q  231 acgcaagcttggctctcactctatggttgatttcttagtgataaacctttttcatatcaatggcagagcaccaaagagattagattttattgaaattaag 330  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44085294 acgcaagcttggctctcactctatggttgatttcttagtgaaaaacctttttcatatcaatggcagagcaccaaagagattagattttattgaaattaag 44085393  T
Q  331 ttggttcctccaaaggttgggagtatcaaagtgaacatggatgtttaaaattggtgctagtgttgtctagattacgtaa---agattgcatcagcaccat 427  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||    |||||||||||||||||    
T  44085394 ttggttcctccaaaggttgggagtatcaaagtgaacatcgatgtttagaattggtgcttgtgttgtctggattacgtaatctggattgcatcagcaccat 44085493  T
Q  428 -----------nnnnnnnngggtgttcggattatgtaatccgaagaattcatgcaagacacccta-ttttttgagattttcggattacaaaattcggaaa 515  Q
                       || |||||||||||||||||| |||||| | ||| || |||||||| ||||||||||||||  ||||||| ||||||||||    
T  44085494 gaaaaaaaatggtgtttagggctgttcggattatgtaatctgaagaaattatgtaacacaccctatttttttgagatttttagattacataattcggaaa 44085593  T
Q  516 aattcgtaactcatt 530  Q
    ||| ||| |||||||    
T  44085594 aatccgtcactcatt 44085608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 436 - 556
Target Start/End: Complemental strand, 48304058 - 48303938
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    |||| |||||||||||||||| ||| || ||||| || ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  48304058 gggttttcggattatgtaatctgaaaaaatcatgtaacacaccctattttttgagatttccggattacaaaatccggaaaaatccgtaactcattttttc 48303959  T
Q  536 acccttcaacaaagaaaaaca 556  Q
    |||||| ||||||| ||||||    
T  48303958 accctttaacaaaggaaaaca 48303938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 436 - 560
Target Start/End: Original strand, 49096319 - 49096442
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    ||||||| |||||||||||| |||| || ||||| || |  || ||||||||||||||| ||||||||||||| ||||||||| ||||||| | ||||||    
T  49096319 gggtgtttggattatgtaattcgaaaaaatcatgtaacatgccatattttttgagatttccggattacaaaatccggaaaaatccgtaactta-tttttc 49096417  T
Q  536 acccttcaacaaagaaaaacatcat 560  Q
    |||||| || |||||||||||||||    
T  49096418 accctttaataaagaaaaacatcat 49096442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 436 - 556
Target Start/End: Complemental strand, 51258469 - 51258350
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    ||||||||||||||||||||||||| || | ||| ||  | ||||||||||||| ||||  |||||||||||| ||||||||| |||||||||| |||||    
T  51258469 gggtgttcggattatgtaatccgaaaaaattatgtaacgcgccctattttttgaaatttatggattacaaaatccggaaaaatccgtaactcat-ttttc 51258371  T
Q  536 acccttcaacaaagaaaaaca 556  Q
    |||||| ||||||| ||||||    
T  51258370 accctttaacaaaggaaaaca 51258350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 445 - 556
Target Start/End: Complemental strand, 45244447 - 45244336
Alignment:
Q  445 gattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaa 544  Q
    |||||||||||||||| || ||||| ||  | ||||||||||||||||||||| |||||||||| ||||||||| | ||||||||||||||| | || ||    
T  45244447 gattatgtaatccgaaaaaatcatgtaacgcgccctattttttgagattttcgaattacaaaatccggaaaaatccataactcattttttcatcttttaa 45244348  T
Q  545 caaagaaaaaca 556  Q
    ||||| ||||||    
T  45244347 caaaggaaaaca 45244336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 477 - 584
Target Start/End: Complemental strand, 47123132 - 47123027
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataa 576  Q
    |||||||||||||  ||| ||||||||||||||||||||||  ||| |||||||||||||||||| ||||||  ||||||||  ||| | ||||||||||    
T  47123132 ccctattttttgaagtttccggattacaaaattcggaaaaacccgttactcattttttcaccctttaacaaaagaaaacatc--attccagattatataa 47123035  T
Q  577 tccggaat 584  Q
    || |||||    
T  47123034 tctggaat 47123027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 477 - 584
Target Start/End: Complemental strand, 47130498 - 47130393
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataa 576  Q
    |||||||||||||  ||| ||||||||||||||||||||||  ||| |||||||||||||||||| ||||||  ||||||||  ||| | ||||||||||    
T  47130498 ccctattttttgaagtttccggattacaaaattcggaaaaacccgttactcattttttcaccctttaacaaaagaaaacatc--attccagattatataa 47130401  T
Q  577 tccggaat 584  Q
    || |||||    
T  47130400 tctggaat 47130393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 477 - 585
Target Start/End: Original strand, 34821529 - 34821635
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataa 576  Q
    |||||||||||||  ||| ||||||||||||| ||||||| | ||| |||||||||||||||||| ||||||  |||||| |  ||| ||||||||||||    
T  34821529 ccctattttttgaagtttccggattacaaaatccggaaaattccgttactcattttttcaccctttaacaaaagaaaacacc--attccggattatataa 34821626  T
Q  577 tccggaata 585  Q
    || ||||||    
T  34821627 tctggaata 34821635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 580
Target Start/End: Original strand, 3352168 - 3352301
Alignment:
Q  446 attatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactca-ttttttcacccttcaa 544  Q
    ||||||||||||| | |  ||||| ||  ||||||||||||| |  ||| | |||||||||||| |||||||||||| ||||| ||||||||||||| ||    
T  3352168 attatgtaatccggaaacatcatgtaacgcaccctatttttttaagtttcctgattacaaaatttggaaaaattcgttactcatttttttcaccctttaa 3352267  T
Q  545 caaagaaaaacatcatatttcggattatataatccg 580  Q
    |||| |||||||||  |||| |||||||| ||||||    
T  3352268 caaaaaaaaacatc--attttggattataaaatccg 3352301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 478 - 560
Target Start/End: Complemental strand, 28873028 - 28872946
Alignment:
Q  478 cctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcat 560  Q
    |||||||||||| |||||||||||| ||||| | |||||| ||||||||   |||||||||||  ||||||||||||||||||    
T  28873028 cctattttttgaaattttcggattataaaatccagaaaaactcgtaacttcatttttcaccctataacaaagaaaaacatcat 28872946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 443 - 579
Target Start/End: Original strand, 47740031 - 47740165
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||| ||  | |||||||||||||  ||| |||||||||||||  ||||||||  ||  |||||||||||||||||     
T  47740031 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatctgttgctcattttttcacccttt 47740130  T
Q  543 aacaaagaaaaacatcatatttcggattatataatcc 579  Q
    ||||||  ||||||||  ||| |||||||||||||||    
T  47740131 aacaaaagaaaacatc--attccggattatataatcc 47740165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 556
Target Start/End: Complemental strand, 3937414 - 3937335
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    |||||||||||||  ||| |||||||||||||||||||||| |||||||||  ||||||| |||  ||||||| ||||||    
T  3937414 ccctattttttgaagtttccggattacaaaattcggaaaaactcgtaactccatttttcatcctataacaaaggaaaaca 3937335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 584
Target Start/End: Original strand, 38977840 - 38977986
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    |||| ||||||||||||||||| || |   |||| ||  | |||||||||||||  ||| |||||||||||||   ||||||| ||| ||| ||||||||    
T  38977840 gggttttcggattatgtaatcccaaaacaccatgtaacgcgccctattttttgaagtttccggattacaaaatctagaaaaatccgttacttattttttc 38977939  T
Q  536 acccttcaacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    |||||| ||||||  |||||| |  ||| | ||||||||||||||||||    
T  38977940 accctttaacaaaataaaacacc--attccagattatataatccggaat 38977986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 443 - 554
Target Start/End: Complemental strand, 50716312 - 50716201
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||| | | |  ||||| || || |||||||||||||  ||||||||||||||||| || |||||  ||||||||  |||||||||||      
T  50716312 cggattatgtaatctggaaacatcatgtaacacgccctattttttgaagttttcggattacaaaatccgaaaaaacccgtaactccatttttcaccctat 50716213  T
Q  543 aacaaagaaaaa 554  Q
    ||||||| ||||    
T  50716212 aacaaaggaaaa 50716201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 443 - 554
Target Start/End: Original strand, 50796535 - 50796646
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||| | | |  ||||| || || |||||||||||||  ||||||||||||||||| || |||||  ||||||||  |||||||||||      
T  50796535 cggattatgtaatctggaaacatcatgtaacacgccctattttttgaagttttcggattacaaaatccgaaaaaacccgtaactccatttttcaccctat 50796634  T
Q  543 aacaaagaaaaa 554  Q
    ||||||| ||||    
T  50796635 aacaaaggaaaa 50796646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 539
Target Start/End: Complemental strand, 33438548 - 33438486
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcaccc 539  Q
    |||||||||||||  |||| |||||||||||||| ||||||| ||| ||| ||||||||||||    
T  33438548 ccctattttttgaagtttttggattacaaaattcagaaaaatccgttacttattttttcaccc 33438486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 556
Target Start/End: Original strand, 501274 - 501353
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    |||||||||||||  |||| |||||||||||| |||||||| || ||||||  |||||| ||||  ||||||| ||||||    
T  501274 ccctattttttgaagtttttggattacaaaatccggaaaaactcataactccatttttcgccctataacaaaggaaaaca 501353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 548
Target Start/End: Complemental strand, 39149835 - 39149765
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaa 548  Q
    |||||||||||||| || | |||||||||||| ||||||||| |||  || |||||||||||||| ||||||    
T  39149835 ccctattttttgagtttct-ggattacaaaatccggaaaaatccgttgctaattttttcaccctttaacaaa 39149765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 518
Target Start/End: Complemental strand, 42936728 - 42936685
Alignment:
Q  475 caccctattttttgagattttcggattacaaaattcggaaaaat 518  Q
    |||||||||||||||  ||||||||||||||||| |||||||||    
T  42936728 caccctattttttgaagttttcggattacaaaatccggaaaaat 42936685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 514 - 549
Target Start/End: Original strand, 42937115 - 42937150
Alignment:
Q  514 aaaattcgtaactcattttttcacccttcaacaaag 549  Q
    |||||||||||||||||||||||||||| |||||||    
T  42937115 aaaattcgtaactcattttttcaccctttaacaaag 42937150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 556
Target Start/End: Complemental strand, 47302081 - 47301966
Alignment:
Q  441 ttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcaccct 540  Q
    |||||||||||||||||| | |  ||||| ||  | || |||||||| |  ||| ||||||||||||| ||||||||| | ||||||  |||||||||||    
T  47302081 ttcggattatgtaatccggaaacatcatgtaacgcgccttatttttttaagtttccggattacaaaatccggaaaaatccataactccatttttcaccct 47301982  T
Q  541 tcaacaaagaaaaaca 556  Q
      ||||||| ||||||    
T  47301981 ataacaaaggaaaaca 47301966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 584
Target Start/End: Original strand, 51540747 - 51540854
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactca--ttttttcacccttcaacaaagaaaaacatcatatttcggattatat 574  Q
    |||||||||||||  ||| |||||| |||||| | ||||||| ||| |||||  ||||||||||||| ||||||  |||||| |  |||||||||||||     
T  51540747 ccctattttttgaagtttccggattccaaaatccagaaaaatccgttactcattttttttcaccctttaacaaaagaaaacacc--atttcggattataa 51540844  T
Q  575 aatccggaat 584  Q
    |||| |||||    
T  51540845 aatctggaat 51540854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 584
Target Start/End: Original strand, 3902941 - 3903044
Alignment:
Q  479 ctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataatc 578  Q
    |||||||||||  ||||||||||||||||| ||||||||   |||||||   ||||||||||  ||||||| |||||| |  ||| ||||||||  ||||    
T  3902941 ctattttttgaagttttcggattacaaaatccggaaaaaccagtaactccacttttcaccctataacaaaggaaaacacc--attccggattatgaaatc 3903038  T
Q  579 cggaat 584  Q
    ||||||    
T  3903039 cggaat 3903044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 556
Target Start/End: Complemental strand, 42936661 - 42936616
Alignment:
Q  511 ggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    |||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  42936661 ggaaaaatccgtaactccttttttcaccctttaacaaaggaaaaca 42936616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 515
Target Start/End: Original strand, 34821442 - 34821514
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaa 515  Q
    |||||||||||||||||| |  ||||| ||  | | |||||||||||  ||| ||||||||||||||||||||    
T  34821442 cggattatgtaatccgaaaacatcatgtaacgcgctctattttttgaagtttccggattacaaaattcggaaa 34821514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 584
Target Start/End: Complemental strand, 35142134 - 35141998
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||| ||  | ||||| |||||||  ||| ||||||||||||  ||||||||| ||| |||   ||||||||||||     
T  35142134 cggattatgtaatccggaaacatcatgtaacgcgccctaatttttgaagtttccggattacaaaacccggaaaaatccgttact---tttttcacccttt 35142038  T
Q  543 aacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    ||||||  | |||| |||  | ||||||||||||||||||||    
T  35142037 aacaaaagataacaccat--tccggattatataatccggaat 35141998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 436 - 534
Target Start/End: Original strand, 24604454 - 24604552
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcatttttt 534  Q
    |||||||||||||||||||||||||||| ||||| ||||| |||||||||||||  |||| |||||||||||||||||||||| | |||||||||||||    
T  24604454 gggtgttcggattatgtaatccgaagaaatcatgtaagacgccctattttttgaagtttttggattacaaaattcggaaaaatccttaactcatttttt 24604552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 436 - 584
Target Start/End: Complemental strand, 7412895 - 7412749
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    |||| |||||||||||||||||| | |  ||||| || || |||||||||||||  ||| ||||||||||||| ||||||||  ||| ||||||||||||    
T  7412895 gggttttcggattatgtaatccggaaacatcatgtaacacgccctattttttgaagtttccggattacaaaatccggaaaaacccgttactcattttttc 7412796  T
Q  536 acccttcaacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    |||||| ||||||  ||||||||  ||| | ||||||||||||||||||    
T  7412795 accctttaacaaaagaaaacatc--attccagattatataatccggaat 7412749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 436 - 541
Target Start/End: Original strand, 1945621 - 1945726
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    |||||||| |||||| ||||||| | |||| ||| ||  ||||||| |||||||  ||||||||||||||||| ||||||||| ||||||||||||||||    
T  1945621 gggtgttcagattatataatccggaaaatttatgtaacgcaccctagtttttgaagttttcggattacaaaatccggaaaaatccgtaactcattttttc 1945720  T
Q  536 accctt 541  Q
    ||||||    
T  1945721 accctt 1945726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 443 - 560
Target Start/End: Complemental strand, 17264470 - 17264353
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||| ||  | |||||||||||||  ||| | ||||||||||| ||||||||| ||| |||||||||||||||||      
T  17264470 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaatccggaaaaatccgttactcattttttcaccctgt 17264371  T
Q  543 aacaaagaaaaacatcat 560  Q
    ||||||  ||||||||||    
T  17264370 aacaaaagaaaacatcat 17264353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 548
Target Start/End: Original strand, 14587693 - 14587764
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaa 548  Q
    ||||||||||| |  ||||||||||||||||| ||||||||| | | |||||||||||||||||| ||||||    
T  14587693 ccctattttttaaagttttcggattacaaaatccggaaaaatcccttactcattttttcaccctttaacaaa 14587764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 556
Target Start/End: Complemental strand, 23406822 - 23406743
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    |||||||||||||  ||| |||||||| ||||||||||||| |||||||||  |||||||||||  ||||||| ||||||    
T  23406822 ccctattttttgaagtttccggattacgaaattcggaaaaactcgtaactccatttttcaccctataacaaaggaaaaca 23406743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 556
Target Start/End: Original strand, 33413485 - 33413558
Alignment:
Q  483 tttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    |||||||  ||| ||||||||||||||| ||||||||||||||||  |||||||||||  ||||||| ||||||    
T  33413485 tttttgaagtttccggattacaaaattcagaaaaattcgtaactccatttttcaccctataacaaaggaaaaca 33413558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 443 - 540
Target Start/End: Original strand, 4508401 - 4508498
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcaccct 540  Q
    |||||||| ||||||| | |  ||||| || || ||||| ||||||| ||||  |||||| ||||| ||||||||| ||| |||||||||||||||||    
T  4508401 cggattatataatccggaaacatcatgtaacacgccctaatttttgaaatttctggattataaaatccggaaaaatccgttactcattttttcaccct 4508498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 443 - 556
Target Start/End: Complemental strand, 5699618 - 5699505
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||| ||  | ||||||||||| |  ||| |||||||||||||||| |||||  ||||||||  |||||||||||      
T  5699618 cggattatgtaatccggaaacatcatgtaacgcgccctattttttcaagtttccggattacaaaattcgaaaaaacccgtaactccatttttcaccctat 5699519  T
Q  543 aacaaagaaaaaca 556  Q
    ||||||| ||||||    
T  5699518 aacaaaggaaaaca 5699505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 443 - 536
Target Start/End: Complemental strand, 32035173 - 32035080
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttca 536  Q
    |||||||||||||||| | |  ||||| ||  | |||||||||||||  ||| ||||||||||||| ||||||||| ||||||||  |||||||    
T  32035173 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatccgtaactccatttttca 32035080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 548
Target Start/End: Original strand, 3717416 - 3717487
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaa 548  Q
    ||||| |||||||  ||| |||||||||||||||||||||   | | |||||||||||||||||| ||||||    
T  3717416 ccctaatttttgaagtttccggattacaaaattcggaaaagcccattactcattttttcaccctttaacaaa 3717487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 540
Target Start/End: Original strand, 2813323 - 2813422
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaa--attcggaaaaattcgtaactcattttttcaccct 540  Q
    |||||||||||||||| | |  ||||| || ||||| ||||||||||  ||| |||||||||||  || |||||||||  |||||||  |||||||||||    
T  2813323 cggattatgtaatccggaaacatcatgtaacacaccttattttttgaagtttccggattacaaaatatccggaaaaatctgtaactccatttttcaccct 2813422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 436 - 560
Target Start/End: Complemental strand, 41530737 - 41530612
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaat-tcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcatttttt 534  Q
    |||||||| |||||||||||| ||| ||  ||||| ||  | |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||     
T  41530737 gggtgttcagattatgtaatctgaaaaaaatcatgtaacgcgccctattttttgagatttccggattacaaaattcggaaaaatccgtaactcatttttc 41530638  T
Q  535 cacccttcaacaaagaaaaacatcat 560  Q
    ||||||| ||||||| ||||||||||    
T  41530637 caccctttaacaaaggaaaacatcat 41530612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 441 - 549
Target Start/End: Original strand, 36404252 - 36404359
Alignment:
Q  441 ttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcaccct 540  Q
    |||||||||| ||||||||| ||| |||| || || |||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||    
T  36404252 ttcggattatataatccgaaaaat-catgtaacacgccctattttttgagattttcggattacaaaatccggaataatccgtaactcattttttcaccct 36404350  T
Q  541 tcaacaaag 549  Q
    | |||||||    
T  36404351 ttaacaaag 36404359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 479 - 584
Target Start/End: Original strand, 42281029 - 42281132
Alignment:
Q  479 ctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataatc 578  Q
    |||||||||||  |||||||||||| |||| ||||||||| ||| |||||||||||||||||| |||||| |||||||||  ||| |||||||||||||     
T  42281029 ctattttttgaagttttcggattacgaaatccggaaaaatccgttactcattttttcaccctttaacaaaaaaaaacatc--attccggattatataatt 42281126  T
Q  579 cggaat 584  Q
    ||||||    
T  42281127 cggaat 42281132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 443 - 584
Target Start/End: Original strand, 8885552 - 8885691
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||| ||  | |||||||||||||  ||| ||||||||||||| ||||||||  ||| |||||||||||||| |||     
T  8885552 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgttactcattttttcactcttt 8885651  T
Q  543 aacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    ||||||  ||||||||  ||| ||||||||||||||||||||    
T  8885652 aacaaaagaaaacatc--attccggattatataatccggaat 8885691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 477 - 559
Target Start/End: Original strand, 27928074 - 27928156
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatca 559  Q
    |||||||||||||  ||| ||||||||||||| ||||||||| ||| |||||||||||||||||| ||||||  |||||||||    
T  27928074 ccctattttttgaagtttccggattacaaaatccggaaaaatccgttactcattttttcaccctttaacaaaagaaaacatca 27928156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 443 - 548
Target Start/End: Complemental strand, 44106283 - 44106178
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||| ||  | |||||||||||||  ||| |||||||||||||  |||||||| ||| ||||||||||||||||||     
T  44106283 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatccgttactcattttttcacccttt 44106184  T
Q  543 aacaaa 548  Q
    ||||||    
T  44106183 aacaaa 44106178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 560
Target Start/End: Complemental strand, 28916809 - 28916726
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcat 560  Q
    |||||||||||||  ||| ||||||||||||| ||||||||  ||| || ||||||||||||||| ||||||  ||||||||||    
T  28916809 ccctattttttgaagtttccggattacaaaatccggaaaaacccgttacccattttttcaccctttaacaaaagaaaacatcat 28916726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 443 - 556
Target Start/End: Complemental strand, 3094741 - 3094628
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||| ||  | |||||||||||||  ||| ||||||||||||| ||||||||  ||||||||  |||||||||||      
T  3094741 cggattatgtaatccggaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgtaactccatttttcaccctat 3094642  T
Q  543 aacaaagaaaaaca 556  Q
    ||||||| ||||||    
T  3094641 aacaaaggaaaaca 3094628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 585
Target Start/End: Complemental strand, 9073527 - 9073424
Alignment:
Q  480 tattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataatcc 579  Q
    ||||||||||  ||| |||||||  |||| || |||| | ||| ||||||||||| |||||| ||||||  ||||||||  |||||| ||||||||||||    
T  9073527 tattttttgaagtttccggattaacaaatccgaaaaagtccgttactcattttttaaccctttaacaaaagaaaacatc--atttcgaattatataatcc 9073430  T
Q  580 ggaata 585  Q
    ||||||    
T  9073429 ggaata 9073424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 556
Target Start/End: Complemental strand, 21004397 - 21004337
Alignment:
Q  496 cggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    ||||||||||||| ||||||||| ||||||||  |||||||||||  ||||||| ||||||    
T  21004397 cggattacaaaatccggaaaaatccgtaactccatttttcaccctataacaaaggaaaaca 21004337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 560
Target Start/End: Complemental strand, 34853355 - 34853273
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcat 560  Q
    ||||||||||| |  ||||||||||||||||| ||||||||  ||| ||||||||| | |||||| ||||||  ||||||||||    
T  34853355 ccctattttttaaagttttcggattacaaaatccggaaaaacccgt-actcattttcttaccctttaacaaaataaaacatcat 34853273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 556
Target Start/End: Complemental strand, 37248584 - 37248505
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    ||||||||||| |  ||||||||||||||||| | ||||||  ||||||||  |||||||||||  ||||||| ||||||    
T  37248584 ccctatttttttaagttttcggattacaaaatccagaaaaacccgtaactccatttttcaccctataacaaaggaaaaca 37248505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 556
Target Start/End: Complemental strand, 16310627 - 16310546
Alignment:
Q  475 caccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    |||||||||||||||  ||| ||||||||||||| ||||||||   |||||||  ||||||||||   ||||||| ||||||    
T  16310627 caccctattttttgaagtttccggattacaaaatccggaaaaacctgtaactccatttttcaccccataacaaaggaaaaca 16310546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 556
Target Start/End: Original strand, 31520027 - 31520104
Alignment:
Q  479 ctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    |||||||||||  |||  |||||||||||| ||||||||  ||||||||  |||||||||||  ||||||| ||||||    
T  31520027 ctattttttgaagtttctggattacaaaatccggaaaaagccgtaactccatttttcaccctataacaaaggaaaaca 31520104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 438 - 559
Target Start/End: Complemental strand, 27212735 - 27212614
Alignment:
Q  438 gtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcac 537  Q
    |||||| | |||||||||||||| || ||||| ||  |||||||||||||||||||||||||||||||||| || |||||  ||||||||||||||||||    
T  27212735 gtgttctggttatgtaatccgaaaaaatcatgtaacgcaccctattttttgagattttcggattacaaaatccgaaaaaacccgtaactcattttttcac 27212636  T
Q  538 ccttcaacaaagaaaaacatca 559  Q
    |||  ||||||| |||||||||    
T  27212635 cctataacaaaggaaaacatca 27212614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 477 - 584
Target Start/End: Original strand, 31929239 - 31929343
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataa 576  Q
    ||||||||||||| ||||  |||||||||||| ||||||||| ||| ||||| |||||||||||| ||||||  ||||||||  ||| ||||||||||||    
T  31929239 ccctattttttgaaatttctggattacaaaatccggaaaaatccgttactca-tttttcaccctttaacaaaagaaaacatc--attccggattatataa 31929335  T
Q  577 tccggaat 584  Q
    ||||||||    
T  31929336 tccggaat 31929343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 477 - 584
Target Start/End: Original strand, 40620123 - 40620228
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataa 576  Q
    |||||||||||||  ||| ||||||||||||| |||||||||  || |||||||||||||||||||||||||  ||||||||  |||  |||||||||||    
T  40620123 ccctattttttgaagtttccggattacaaaatccggaaaaatctgttactcattttttcacccttcaacaaaagaaaacatc--attatggattatataa 40620220  T
Q  577 tccggaat 584  Q
    || |||||    
T  40620221 tctggaat 40620228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 443 - 585
Target Start/End: Original strand, 28083477 - 28083617
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||| ||  | |||||||||||||  ||| ||||||||||||| ||||||||  ||| ||||||||| ||||||||     
T  28083477 cggattatgtaatccggaaatatcatgtaatgcgccctattttttgaattttccggattacaaaatccggaaaaacccgttactcattttctcacccttt 28083576  T
Q  543 aacaaagaaaaacatcatatttcggattatataatccggaata 585  Q
    ||||||  ||||||||  ||| ||||||||||||||| |||||    
T  28083577 aacaaaagaaaacatc--attccggattatataatccagaata 28083617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 446 - 584
Target Start/End: Complemental strand, 39524795 - 39524659
Alignment:
Q  446 attatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaac 545  Q
    ||||||||||||||| |  ||||| || || ||||||||||| |  ||| ||||||||||||| ||||||||| | |  ||||||||||||||||| |||    
T  39524795 attatgtaatccgaaaacatcatgtaacacgccctatttttttaagtttccggattacaaaatccggaaaaatccattgctcattttttcaccctttaac 39524696  T
Q  546 aaagaaaaacatcatatttcggattatataatccggaat 584  Q
    |||  ||||||||  ||||||||||| ||||| ||||||    
T  39524695 aaaagaaaacatc--atttcggattacataattcggaat 39524659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 477 - 584
Target Start/End: Original strand, 38692915 - 38693021
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcgg-aaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatata 575  Q
    ||||||||||| |  ||| ||||||||||||||||| |||||  ||| |||||||||||||||||| ||||||  ||||||||  ||| |||||||||||    
T  38692915 ccctatttttttaagtttccggattacaaaattcggaaaaaacccgttactcattttttcaccctttaacaaaagaaaacatc--attccggattatata 38693012  T
Q  576 atccggaat 584  Q
    |||||||||    
T  38693013 atccggaat 38693021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 477 - 556
Target Start/End: Complemental strand, 33487598 - 33487519
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    |||||||||||||  ||||||||||||||||||||||||||  ||||||||  |||||||||||  ||||||| ||||||    
T  33487598 ccctattttttgaagttttcggattacaaaattcggaaaaacccgtaactccatttttcaccctgtaacaaaggaaaaca 33487519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 446 - 539
Target Start/End: Original strand, 26190400 - 26190493
Alignment:
Q  446 attatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcaccc 539  Q
    ||||||||||||||| |  ||||| ||  |||||||||||||||  ||| ||||||||||||| ||||||||| ||||||||  ||||||||||    
T  26190400 attatgtaatccgaaaacatcatgtaacgcaccctattttttgaagtttccggattacaaaatccggaaaaatccgtaactccatttttcaccc 26190493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 436 - 508
Target Start/End: Complemental strand, 23269370 - 23269298
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaat 508  Q
    ||||||||||||||| ||||||||| || ||| | || |||||||||||| |||||||||||||||| |||||    
T  23269370 gggtgttcggattatttaatccgaaaaaatcaagtaaaacaccctattttatgagattttcggattataaaat 23269298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 436 - 554
Target Start/End: Complemental strand, 15799254 - 15799136
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    |||| |||||||||||||||||| | |  ||||| ||  | |||||||||||||  ||| ||||||||||||| ||||||||  ||||||||  ||||||    
T  15799254 gggttttcggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgtaactccatttttc 15799155  T
Q  536 acccttcaacaaagaaaaa 554  Q
    |||||  ||||||| ||||    
T  15799154 accctataacaaaggaaaa 15799136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 436 - 534
Target Start/End: Complemental strand, 38871700 - 38871602
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcatttttt 534  Q
    |||| |||||||||||||||||| | |  ||||| ||  | ||||||||| |||  ||||||||||||||||| ||||||||| ||| |||||||||||    
T  38871700 gggttttcggattatgtaatccggaaacatcatgtaacgccccctattttatgaagttttcggattacaaaatccggaaaaatccgttactcatttttt 38871602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 582
Target Start/End: Complemental strand, 20891642 - 20891497
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcatt-tttt 534  Q
    |||| ||||||||||||||| || | |  ||||| || |  |||||||||||||  ||| ||||||||||||| ||||||||| ||| ||||||| ||||    
T  20891642 gggttttcggattatgtaattcggaaacatcatgtaacatgccctattttttgaagtttccggattacaaaatccggaaaaatccgttactcattttttt 20891543  T
Q  535 cacccttcaacaaagaaaaacatcatatttcggattatataatccgga 582  Q
    |||| || || |||  |||||| |  ||||||||||||| ||||||||    
T  20891542 caccatttaataaaagaaaacacc--atttcggattataaaatccgga 20891497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 548
Target Start/End: Original strand, 36359678 - 36359789
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    |||| ||| |||||||||||||||| || |||||  |  |  |||||||||||||||||  |||||||||||| || |||| | ||||||||| ||||||    
T  36359678 gggttttcagattatgtaatccgaaaaaatcatgttacgcgtcctattttttgagatttctggattacaaaatccgaaaaattccgtaactca-tttttc 36359776  T
Q  536 acccttcaacaaa 548  Q
    |||||| ||||||    
T  36359777 accctttaacaaa 36359789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 540
Target Start/End: Original strand, 12465239 - 12465302
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcaccct 540  Q
    |||||||||||||  ||| ||||||||||||| ||||||||| ||||||||  |||||||||||    
T  12465239 ccctattttttgaagtttccggattacaaaatccggaaaaatccgtaactccatttttcaccct 12465302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 548
Target Start/End: Complemental strand, 38372297 - 38372226
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaa 548  Q
    ||||||||||| |  ||| ||||||||||||| | ||||||| ||| |||||||||||||||||| ||||||    
T  38372297 ccctatttttttaagtttccggattacaaaatccagaaaaatccgttactcattttttcaccctttaacaaa 38372226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 556
Target Start/End: Complemental strand, 38640751 - 38640629
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactca--ttttt 533  Q
    ||||||||||||||||||||||||| || ||||  ||  | |||||||||||||||||| | ||||| ||||| || |||  |  ||| ||||  |||||    
T  38640751 gggtgttcggattatgtaatccgaataaatcatttaacgcgccctattttttgagatttccagattataaaatccgaaaatctctgtagctcattttttt 38640652  T
Q  534 tcacccttcaacaaagaaaaaca 556  Q
    |||||||| ||||||| ||||||    
T  38640651 tcaccctttaacaaaggaaaaca 38640629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 584
Target Start/End: Complemental strand, 6156753 - 6156614
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||| ||  | |||||||||||||  ||| ||||||||||||| ||||||||  ||||||||  ||||||||| |      
T  6156753 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgtaactccatttttcaccatat 6156654  T
Q  543 aacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    ||||||| |||||| |  ||| ||||||||  ||||||||||    
T  6156653 aacaaaggaaaacacc--attccggattatgaaatccggaat 6156614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 492 - 549
Target Start/End: Original strand, 37095062 - 37095119
Alignment:
Q  492 ttttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaag 549  Q
    ||||||||||||||||| ||||||||| ||||||||  |||||||||||  |||||||    
T  37095062 ttttcggattacaaaatccggaaaaatccgtaactccatttttcaccctataacaaag 37095119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 556
Target Start/End: Complemental strand, 26319146 - 26319027
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    |||| |||||||||||||||||| | |  ||||| ||  |||||||||||   || ||| ||||| ||||||| ||||||||| ||||||||  ||||||    
T  26319146 gggttttcggattatgtaatccggaaacatcatgtaacgcaccctattttggaag-tttccggataacaaaatccggaaaaatccgtaactccatttttc 26319048  T
Q  536 acccttcaacaaagaaaaaca 556  Q
    |||||  ||||||| ||||||    
T  26319047 accctataacaaaggaaaaca 26319027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 508
Target Start/End: Original strand, 28445503 - 28445575
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaat 508  Q
    ||||||||||||| | ||||| ||| |||||||  |   | ||||||||||||||||||||||||||||||||    
T  28445503 gggtgttcggattttataatctgaaaaattcatttagcgcgccctattttttgagattttcggattacaaaat 28445575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 584
Target Start/End: Original strand, 37183915 - 37184020
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataa 576  Q
    |||||||||||||  |||   |||||||||||   |||||||  || |||||||||||||||| | ||||||  |||||||  |||| ||||||||||||    
T  37183915 ccctattttttgaagtttcaagattacaaaatctagaaaaatctgttactcattttttcacccgttaacaaaagaaaacat--tattccggattatataa 37184012  T
Q  577 tccggaat 584  Q
    ||||||||    
T  37184013 tccggaat 37184020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 573
Target Start/End: Original strand, 43388202 - 43388298
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactca--ttttttcacccttcaacaaagaaaaacatcatatttcggattata 573  Q
    ||||||||||| |||||| ||||||||||||| |  || ||| |||||||||  ||||||||| ||| ||||||| |||||| |  |||||||||||||    
T  43388202 ccctatttttttagatttccggattacaaaatccaaaagaatccgtaactcattttttttcacactttaacaaaggaaaacacc--atttcggattata 43388298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 537
Target Start/End: Complemental strand, 25747047 - 25746954
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcac 537  Q
    |||||||||||||||||| |  ||||| ||  | ||||||||||  || ||| ||||||| ||||| ||||||||| ||| ||||||||||||||    
T  25747047 cggattatgtaatccgaaaacatcatgtaacgcgccctatttttgaag-tttccggattagaaaatccggaaaaatccgttactcattttttcac 25746954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 556
Target Start/End: Original strand, 4064819 - 4064932
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||  || || ||||||||||| |  ||| ||||||||| ||| ||||||||  ||||||||  |||||||||||      
T  4064819 cggattatgtaatccggaaacatcatctaacacgccctattttttaaagtttccggattacataatccggaaaaacccgtaactccatttttcaccctat 4064918  T
Q  543 aacaaagaaaaaca 556  Q
    ||||||| ||||||    
T  4064919 aacaaaggaaaaca 4064932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 518
Target Start/End: Complemental strand, 8032299 - 8032218
Alignment:
Q  437 ggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaat 518  Q
    |||||||||||||||||||||| | || ||||| ||    ||||||||||||| |||| | ||||||||||| || ||||||    
T  8032299 ggtgttcggattatgtaatccggaaaaatcatgtaatgtgccctattttttgaaatttccagattacaaaatccgaaaaaat 8032218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 436 - 556
Target Start/End: Original strand, 43319288 - 43319408
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    |||| |||||||||||||||||||| || ||||| ||  | || |||||||| |||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  43319288 gggttttcggattatgtaatccgaaaaaatcatgtaacgcgccatatttttttagatttccggattacaaaatccggaaaaatccgtaactcattttttc 43319387  T
Q  536 acccttcaacaaagaaaaaca 556  Q
    |||||| ||||||| ||||||    
T  43319388 accctttaacaaaggaaaaca 43319408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 436 - 584
Target Start/End: Original strand, 32817703 - 32817849
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    |||| |||||||||||||||| | | |  ||||| ||  | |||||||||||||  ||| |||||||||||||  |||||||  ||| ||||||||||||    
T  32817703 gggttttcggattatgtaatctggaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatctggaaaaacccgttactcattttttc 32817802  T
Q  536 acccttcaacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    |||||| ||||||  ||||||||  ||| ||||||||||||||||||||    
T  32817803 accctttaacaaaagaaaacatc--attccggattatataatccggaat 32817849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 436 - 556
Target Start/End: Original strand, 6223829 - 6223950
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctatttttt-gagattttcggattacaaaattcggaaaaattcgtaactcatttttt 534  Q
    |||||||||||||||||||||| || || ||||| ||  | | ||||||||| ||  ||||||||||  |||||||| |||||| |||||||||||||||    
T  6223829 gggtgttcggattatgtaatccaaaaaaatcatgtaatgcgctctatttttttgaagttttcggattgaaaaattcgaaaaaatccgtaactcatttttt 6223928  T
Q  535 cacccttcaacaaagaaaaaca 556  Q
    ||||||  ||||||| ||||||    
T  6223929 caccctataacaaaggaaaaca 6223950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 436 - 584
Target Start/End: Original strand, 40908026 - 40908172
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    |||| |||||||||||||||||||| |  ||||| |  || ||| |||||||||  ||| |||||| ||||||||  |||||| ||| ||||||||||||    
T  40908026 gggttttcggattatgtaatccgaaaacatcatgtagcacgcccaattttttgaagtttccggattgcaaaattctaaaaaatccgttactcattttttc 40908125  T
Q  536 acccttcaacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    |||||| ||||||  |||||| |  ||||||||||||| |||| |||||    
T  40908126 accctttaacaaaagaaaacacc--atttcggattataaaatctggaat 40908172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 477 - 584
Target Start/End: Original strand, 52744950 - 52745055
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataa 576  Q
    |||||||||||||  ||||| ||||||||||||||||||||| ||| |||||||||||||| ||| ||||||  |||| |||  |||   ||||||||||    
T  52744950 ccctattttttgaagttttcagattacaaaattcggaaaaatccgttactcattttttcacactttaacaaaagaaaatatc--attctagattatataa 52745047  T
Q  577 tccggaat 584  Q
    ||||||||    
T  52745048 tccggaat 52745055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 483 - 556
Target Start/End: Complemental strand, 27794875 - 27794802
Alignment:
Q  483 tttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    ||||||||||||||||||||||||||  | |||||| | |||||||||||||||||||  ||||||| ||||||    
T  27794875 tttttgagattttcggattacaaaatctgaaaaaatccataactcattttttcaccctataacaaaggaaaaca 27794802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 585
Target Start/End: Original strand, 15069976 - 15070081
Alignment:
Q  478 cctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataat 577  Q
    ||||||||||||  ||| ||||||||||||| || ||| || ||| |||||||| ||| ||||| ||||||  ||||||||  |||||||||||||||||    
T  15069976 cctattttttgaagtttccggattacaaaatccgaaaatatccgttactcatttgttctccctttaacaaaagaaaacatc--atttcggattatataat 15070073  T
Q  578 ccggaata 585  Q
     |||||||    
T  15070074 tcggaata 15070081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 443 - 547
Target Start/End: Original strand, 44573195 - 44573299
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||||| |  ||||| ||  | |||||||||||||  ||| ||||||||||||| || ||||||  || ||||||||||||||||||     
T  44573195 cggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccgaaaaaatctgttactcattttttcacccttt 44573294  T
Q  543 aacaa 547  Q
    |||||    
T  44573295 aacaa 44573299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 580
Target Start/End: Original strand, 45568009 - 45568111
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactca-ttttttcacccttcaacaaagaaaaacatcatatttcggattatata 575  Q
    |||||||||||||  ||| || |||||||||||||||||||  ||| ||||| ||||||||||||| ||||||  |||| |||  ||| |||||||||||    
T  45568009 ccctattttttgaagtttccgaattacaaaattcggaaaaacccgttactcatttttttcaccctttaacaaaagaaaatatc--attccggattatata 45568106  T
Q  576 atccg 580  Q
    |||||    
T  45568107 atccg 45568111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 514 - 584
Target Start/End: Complemental strand, 49677482 - 49677414
Alignment:
Q  514 aaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    ||||||||| |||||||||||||||||| ||||||  |||||| |  ||| ||||||||||||||||||||    
T  49677482 aaaattcgttactcattttttcaccctttaacaaaagaaaacacc--attccggattatataatccggaat 49677414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 535
Target Start/End: Original strand, 45046983 - 45047041
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    |||| ||||||||  ||||||||||||||||| ||||||||| ||| ||||||||||||    
T  45046983 ccctcttttttgaagttttcggattacaaaatccggaaaaatccgttactcattttttc 45047041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 508
Target Start/End: Original strand, 800894 - 800966
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaat 508  Q
    ||||||||||||| | ||||||||| || |||   ||  | ||||||||||||||||||||||||||||||||    
T  800894 gggtgttcggattctataatccgaaaaaatcaaataaagcgccctattttttgagattttcggattacaaaat 800966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 508
Target Start/End: Original strand, 9446187 - 9446218
Alignment:
Q  477 ccctattttttgagattttcggattacaaaat 508  Q
    ||||||||||||||||||||||||||||||||    
T  9446187 ccctattttttgagattttcggattacaaaat 9446218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 560
Target Start/End: Complemental strand, 23442764 - 23442681
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcat 560  Q
    |||||||||||||  ||| | ||||| ||||| ||||||||| ||||||||  ||||||||| |  ||||||| ||||||||||    
T  23442764 ccctattttttgaagtttccagattataaaatccggaaaaatccgtaactccatttttcaccttataacaaaggaaaacatcat 23442681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 556
Target Start/End: Original strand, 33611543 - 33611622
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    |||||||||||||  ||| |  |||||||||| || |||||| ||||||||  |||||||||||  ||||||||||||||    
T  33611543 ccctattttttgaagtttccaaattacaaaatccgaaaaaatccgtaactccatttttcaccctataacaaagaaaaaca 33611622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 38885232 - 38885160
Alignment:
Q  510 cggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    |||||||||  || |||||||||||||||||| ||||||  |||||| |  ||| ||||||||||||||||||||    
T  38885232 cggaaaaatctgttactcattttttcaccctttaacaaaagaaaacacc--attccggattatataatccggaat 38885160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 584
Target Start/End: Original strand, 40650774 - 40650914
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactca-ttttttcaccctt 541  Q
    |||||||||||||||  | |  ||||| || || |||||||||||||  ||| ||||||||||| | || |||||| ||| ||||| ||||||||| |||    
T  40650774 cggattatgtaatccagaaacatcatgtaacacgccctattttttgaagtttccggattacaaattccgaaaaaatccgttactcatttttttcacgctt 40650873  T
Q  542 caacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
     ||||||  |||||| |  ||| ||||||||||||| ||||||    
T  40650874 taacaaaagaaaacacc--attccggattatataattcggaat 40650914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 584
Target Start/End: Complemental strand, 42545992 - 42545889
Alignment:
Q  478 cctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataat 577  Q
    ||||||||||||  ||| ||||||||||||| ||||||||| ||| | ||| |||||||||||| ||||||  | |||| |  ||| |||||||||||||    
T  42545992 cctattttttgaagtttccggattacaaaatccggaaaaatccgttattca-tttttcaccctttaacaaaagataacacc--attccggattatataat 42545896  T
Q  578 ccggaat 584  Q
    | |||||    
T  42545895 ctggaat 42545889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 556
Target Start/End: Original strand, 18583643 - 18583756
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||||| |  ||||| ||  | ||||||||||| |  ||| | ||||||||||| ||||||| | |||||||   |||||||||||      
T  18583643 cggattatgtaatccgaaaacatcatgtaacgcgccctatttttttaagtttccagattacaaaatccggaaaagtccgtaacttcatttttcaccctat 18583742  T
Q  543 aacaaagaaaaaca 556  Q
    ||||||| ||||||    
T  18583743 aacaaaggaaaaca 18583756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 540
Target Start/End: Original strand, 41584769 - 41584866
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcaccct 540  Q
    |||||||||||||||||| |  ||||| || |  ||||| ||||||| |||| ||||||||||||| | ||||||  |||||||   |||||||||||    
T  41584769 cggattatgtaatccgaaaacatcatgtaacatgccctagtttttgaaatttccggattacaaaatccagaaaaacccgtaacttcatttttcaccct 41584866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 437 - 554
Target Start/End: Original strand, 9847513 - 9847630
Alignment:
Q  437 ggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttca 536  Q
    ||||||||||||||||||| |||| || ||||| ||  | ||| ||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||    
T  9847513 ggtgttcggattatgtaatacgaaaaaatcatgtaacgcgcccaattttttgagattttcggattacaaaatctggaaaaatcagtaactcattttttca 9847612  T
Q  537 cccttcaacaaagaaaaa 554  Q
    | ||| ||||||||||||    
T  9847613 ctctttaacaaagaaaaa 9847630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 445 - 584
Target Start/End: Complemental strand, 39447220 - 39447078
Alignment:
Q  445 gattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaa 544  Q
    |||||||||||||||| |  ||||| ||  | |||||||||||||  ||||||||||||||||| ||||||||| ||| |||||||||||||||||| ||    
T  39447220 gattatgtaatccgaaaacatcatgtaatgcgccctattttttgaagttttcggattacaaaatccggaaaaatccgttactcattttttcaccctttaa 39447121  T
Q  545 caaagaaaaacatcat---atttcggattatataatccggaat 584  Q
    ||||  ||||||||||    ||  |||||||||||||||||||    
T  39447120 caaaagaaaacatcattccgttctggattatataatccggaat 39447078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 438 - 583
Target Start/End: Complemental strand, 25715430 - 25715285
Alignment:
Q  438 gtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaa--ttcgtaactcattttttc 535  Q
    ||||||||||||||||||||||| || ||| | ||  | |||||| |||||||||||| |||||||||| | || |||||  || |||||||||||||||    
T  25715430 gtgttcggattatgtaatccgaaaaaatcaggtaacgcgccctatcttttgagatttttggattacaaagtccgaaaaaaaatttgtaactcattttttc 25715331  T
Q  536 acccttcaacaaagaaaaacatcatatttcggattatataatccggaa 583  Q
    |||||| ||||||| |||||| |  ||| ||||||||| |||||||||    
T  25715330 accctttaacaaaggaaaacacc--attccggattataaaatccggaa 25715285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 444 - 556
Target Start/End: Complemental strand, 34517159 - 34517048
Alignment:
Q  444 ggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttca 543  Q
    ||||||||||||||||| ||| |||| ||  | |||||||||||||||||||  ||||||||||| || |||||||||||||||||||||||||| |  |    
T  34517159 ggattatgtaatccgaaaaat-catgtaacgcgccctattttttgagatttttcgattacaaaatccgaaaaaattcgtaactcattttttcaccgtata 34517061  T
Q  544 acaaagaaaaaca 556  Q
    |||||| ||||||    
T  34517060 acaaaggaaaaca 34517048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 443 - 584
Target Start/End: Original strand, 45153885 - 45154024
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||| ||  | |||||||||||||  ||| | ||||||||||||| ||||||  ||| ||||||||||||||||||     
T  45153885 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaattcagaaaaacccgttactcattttttcacccttt 45153984  T
Q  543 aacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    ||||||  ||||||||  ||| ||||||||||||||||||||    
T  45153985 aacaaaagaaaacatc--attccggattatataatccggaat 45154024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 443 - 560
Target Start/End: Original strand, 25217884 - 25218001
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||| ||  |||||||||||||||  ||| ||||||||||||| || |||||| ||| ||||||||||||||||||     
T  25217884 cggattatgtaatccggaaacatcatgtaacgcaccctattttttgaagtttccggattacaaaatccgaaaaaatccgttactcattttttcacccttt 25217983  T
Q  543 aacaaagaaaaacatcat 560  Q
    ||||||  ||||||||||    
T  25217984 aacaaaagaaaacatcat 25218001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 477 - 585
Target Start/End: Original strand, 33452571 - 33452677
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataa 576  Q
    |||||||||||||  ||| || |||||||||| | ||||||| ||| |||||||||| ||||||| ||||||  ||||||||  ||||||||||||||||    
T  33452571 ccctattttttgaagtttccgaattacaaaatccagaaaaatccgttactcatttttccaccctttaacaaaagaaaacatc--atttcggattatataa 33452668  T
Q  577 tccggaata 585  Q
    |||||||||    
T  33452669 tccggaata 33452677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 477 - 585
Target Start/End: Original strand, 44465856 - 44465962
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataa 576  Q
    |||||||||||||  ||| ||||||||||||| ||||||||| ||| |||||||||||||||||| ||||||  ||||||||  |||  |||||||||||    
T  44465856 ccctattttttgaagtttccggattacaaaatccggaaaaatccgttactcattttttcaccctttaacaaaagaaaacatc--attctggattatataa 44465953  T
Q  577 tccggaata 585  Q
    ||| |||||    
T  44465954 tcctgaata 44465962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 443 - 584
Target Start/End: Original strand, 17474893 - 17475034
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||| ||  | ||||||||||| |  ||| ||||||||||||| ||||||||| ||| ||||||||||||||| ||     
T  17474893 cggattatgtaatccggaaacatcatgtaacgcgccctattttttaaagtttccggattacaaaatccggaaaaatccgttactcattttttcacctttt 17474992  T
Q  543 aacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    ||||||  ||||||| ||    ||||||||||||||||||||    
T  17474993 aacaaaagaaaacattattccccggattatataatccggaat 17475034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 443 - 556
Target Start/End: Original strand, 36949039 - 36949152
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||||| |  ||||| ||  | |||||||||||||  ||| | ||||||||||| ||||||||| ||||||||  |||||||||||      
T  36949039 cggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttgcagattacaaaatccggaaaaatccgtaactccatttttcaccctat 36949138  T
Q  543 aacaaagaaaaaca 556  Q
    ||||||| ||||||    
T  36949139 aacaaaggaaaaca 36949152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 480 - 556
Target Start/End: Complemental strand, 5507439 - 5507363
Alignment:
Q  480 tattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    ||||||||||  |||| ||||||||||||||| ||||||  |||||||||||||||||| |  ||||||| ||||||    
T  5507439 tattttttgaagtttttggattacaaaattcgaaaaaatctgtaactcattttttcaccatataacaaaggaaaaca 5507363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 443 - 584
Target Start/End: Original strand, 32187963 - 32188103
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactca-ttttttcaccctt 541  Q
    |||||||||||||||| | |  ||||| ||  | |||||||||||||  ||| | ||||||||||| | ||||||  ||| ||||| |||||||||||||    
T  32187963 cggattatgtaatccggaaacatcatgtaactcgccctattttttgaagtttccagattacaaaatccagaaaaacccgttactcatttttttcaccctt 32188062  T
Q  542 caacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
     ||||||  ||||||||  ||| ||||||||| ||||||||||    
T  32188063 taacaaaagaaaacatc--attccggattatacaatccggaat 32188103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 580
Target Start/End: Original strand, 15995200 - 15995343
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctatttttt-gagattttcggattacaaaattcggaaaaattcgtaactcatttttt 534  Q
    |||| |||||||||||||||||| | |  ||||||||  | ||||||||||| ||  ||| | ||||||||||| ||||||||  ||| ||| |||||||    
T  15995200 gggttttcggattatgtaatccggaaacatcatgcaacgcgccctatttttttgaagtttcccgattacaaaatccggaaaaacccgttactaatttttt 15995299  T
Q  535 cacccttcaacaaagaaaaacatcatatttcggattatataatccg 580  Q
    ||||||| ||||||  |||||| |  ||| ||||||||| ||||||    
T  15995300 caccctttaacaaaagaaaacacc--attccggattataaaatccg 15995343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 508
Target Start/End: Original strand, 38066760 - 38066832
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaat 508  Q
    ||||||| || |||||||||||||| || ||||  || ||||||||||||||||  ||||||||||| |||||    
T  38066760 gggtgtttgggttatgtaatccgaaaaaatcatataacacaccctattttttgaagttttcggattataaaat 38066832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 580
Target Start/End: Original strand, 41510556 - 41510658
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactca-ttttttcacccttcaacaaagaaaaacatcatatttcggattatata 575  Q
    |||||||||||||  ||| |||||||| ||||  |||||||| ||| ||||| |||||||||||||  |||||  |||||| |  |||||||||||||||    
T  41510556 ccctattttttgaagtttccggattacgaaatctggaaaaatccgttactcatttttttcacccttttacaaaagaaaacacc--atttcggattatata 41510653  T
Q  576 atccg 580  Q
     ||||    
T  41510654 ttccg 41510658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 436 - 556
Target Start/End: Original strand, 3703342 - 3703462
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    ||||||||| ||||||||||||||| || ||||| || ||  ||||||||||||  ||||||||||||||||| || |||||| ||||||||||||||||    
T  3703342 gggtgttcgaattatgtaatccgaaaaaatcatgtaacacgtcctattttttgaagttttcggattacaaaatccgaaaaaatccgtaactcattttttc 3703441  T
Q  536 acccttcaacaaagaaaaaca 556  Q
    |||||  ||||||| ||||||    
T  3703442 accctataacaaaggaaaaca 3703462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 443 - 584
Target Start/End: Complemental strand, 19835588 - 19835449
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||| ||  ||||||||||||  |  ||| ||||||||||||| ||||||||  ||| ||||||||||||||||||     
T  19835588 cggattatgtaatccggaaacatcatgtaacgcaccctatttttcaaagtttccggattacaaaatccggaaaaacccgttactcattttttcacccttt 19835489  T
Q  543 aacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    ||||||  ||||||||  ||| ||||||||||||||||||||    
T  19835488 aacaaaagaaaacatc--attccggattatataatccggaat 19835449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 436 - 556
Target Start/End: Complemental strand, 38416640 - 38416520
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    ||||||||||||||||||||||||| || ||||| ||    ||||||||||| |  ||| |||||||||||||| | |||||| || |||||||||||||    
T  38416640 gggtgttcggattatgtaatccgaaaaaatcatgtaacgtgccctatttttttatgtttccggattacaaaatttgaaaaaatccgcaactcattttttc 38416541  T
Q  536 acccttcaacaaagaaaaaca 556  Q
    |||||  ||||||| ||||||    
T  38416540 accctataacaaaggaaaaca 38416520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 478 - 577
Target Start/End: Original strand, 25491529 - 25491626
Alignment:
Q  478 cctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataat 577  Q
    ||||||||||||  ||| ||||||||||||| || ||||| |||| |||||||||||||||||| ||||||  ||||||||  ||| |||||||||||||    
T  25491529 cctattttttgaagtttccggattacaaaatccgaaaaaactcgttactcattttttcaccctttaacaaaagaaaacatc--attccggattatataat 25491626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 481 - 556
Target Start/End: Original strand, 50392546 - 50392622
Alignment:
Q  481 attttttgagattttcggattacaaaattcggaaaaattcgtaactca-ttttttcacccttcaacaaagaaaaaca 556  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||| ||| ||||||| ||||||    
T  50392546 attttttgagatttccggattacaaaatccggaaaaatccgtaactcatttttttcactctttaacaaaggaaaaca 50392622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 475 - 560
Target Start/End: Complemental strand, 40703700 - 40703614
Alignment:
Q  475 caccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcatt-ttttcacccttcaacaaagaaaaacatcat 560  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||| ||| ||||||| ||||||||||| || |||  ||||||||||    
T  40703700 caccctattttttgaaatttccggattacaaaatccggaaaaatccgttactcattcttttcaccctttaaaaaaagaaaacatcat 40703614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 436 - 584
Target Start/End: Original strand, 48319157 - 48319302
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    |||| |||||||||||||||||  | |  ||||| ||  | |||||||||||||  ||| ||||||||||| | ||||||||| ||| ||||||||||||    
T  48319157 gggttttcggattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattacaaa-tccggaaaaatccgtcactcattttttc 48319255  T
Q  536 acccttcaacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    |||||| ||||||  ||||||||  |||  |||||| ||||||||||||    
T  48319256 accctttaacaaaagaaaacatc--attgtggattaaataatccggaat 48319302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 584
Target Start/End: Complemental strand, 7931692 - 7931590
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataa 576  Q
    |||||||||||||  ||| |||||| |||||| ||||||||  ||| |||||||||||||||||| ||||||  |||||     ||| ||||||||||||    
T  7931692 ccctattttttgaagtttccggattgcaaaatccggaaaaacccgttactcattttttcaccctttaacaaaagaaaac-----attccggattatataa 7931598  T
Q  577 tccggaat 584  Q
    ||||||||    
T  7931597 tccggaat 7931590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 560
Target Start/End: Complemental strand, 49397078 - 49396959
Alignment:
Q  441 ttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcaccct 540  Q
    ||||||||||||||||| || |  || || ||  || ||||||||||||  ||| ||||||||||||| ||||||||| ||||||||  |||||||||||    
T  49397078 ttcggattatgtaatccaaaaacatcttgtaacgcatcctattttttgaagtttccggattacaaaatccggaaaaatccgtaactccatttttcaccct 49396979  T
Q  541 tcaacaaagaaaaacatcat 560  Q
      || |||| ||||||||||    
T  49396978 ataataaaggaaaacatcat 49396959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 478 - 560
Target Start/End: Complemental strand, 23523939 - 23523857
Alignment:
Q  478 cctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcat 560  Q
    ||||||||||||  ||| ||||||||||||| || |||||| ||||||||  |||||||||||  ||||||| ||||||||||    
T  23523939 cctattttttgaagtttccggattacaaaatccgaaaaaatccgtaactccatttttcaccctctaacaaaggaaaacatcat 23523857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 583
Target Start/End: Original strand, 25752536 - 25752684
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactca-tttttt 534  Q
    |||| |||||||||||||||| | | |  ||||| ||  | ||||||||||||| |||| ||||||||||||| ||||||||| | | ||||| ||||||    
T  25752536 gggttttcggattatgtaatctggaaacatcatgtaatgcgccctattttttgaaatttccggattacaaaatccggaaaaatccattactcattttttt 25752635  T
Q  535 cacccttcaacaaagaaaaacatcat-atttcggattatataatccggaa 583  Q
    |||| || |||||| ||||| | ||| ||| ||||||||| |||||||||    
T  25752636 caccttttaacaaa-aaaaaaaacatcattccggattataaaatccggaa 25752684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 584
Target Start/End: Original strand, 17933270 - 17933375
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataa 576  Q
    |||||||||||||  |||  ||||||||||||  |||||||| ||| | |||||||| ||||||| ||||||  ||||||||  ||| | ||||||||||    
T  17933270 ccctattttttgaagtttctggattacaaaatctggaaaaatccgttattcatttttgcaccctttaacaaaagaaaacatc--attccagattatataa 17933367  T
Q  577 tccggaat 584  Q
    ||||||||    
T  17933368 tccggaat 17933375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 537
Target Start/End: Original strand, 49002934 - 49002994
Alignment:
Q  478 cctattttttgagattttcggattacaaaattcgga-aaaattcgtaactcattttttcac 537  Q
    ||||||||||||| |||||||||||||||||| | | |||||| |||||||||||||||||    
T  49002934 cctattttttgaggttttcggattacaaaatttgaataaaatttgtaactcattttttcac 49002994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 584
Target Start/End: Original strand, 53894124 - 53894229
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataa 576  Q
    |||||||||||||  ||| | |||| |||||| ||||||||  ||| | |||||||||||||||| ||||||  ||||||||  ||| ||||||||||||    
T  53894124 ccctattttttgaagtttcctgattgcaaaatccggaaaaacccgttagtcattttttcaccctttaacaaaagaaaacatc--attccggattatataa 53894221  T
Q  577 tccggaat 584  Q
    | ||||||    
T  53894222 ttcggaat 53894229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 583
Target Start/End: Original strand, 2506190 - 2506271
Alignment:
Q  502 acaaaattcggaaaaattcgtaactca-ttttttcacccttcaacaaagaaaaacatcatatttcggattatataatccggaa 583  Q
    |||||||| |||||||| ||| ||||| ||||||||||||| ||||||  |||||||||| |||| ||||||| |||||||||    
T  2506190 acaaaatttggaaaaatccgttactcatttttttcaccctttaacaaaagaaaacatcat-tttctgattataaaatccggaa 2506271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 580
Target Start/End: Original strand, 54631602 - 54631697
Alignment:
Q  483 tttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataatccg 580  Q
    |||||||  ||| ||||||||||||| ||||||||  ||| |||||||||| ||||||| ||||||  ||||| ||  ||| ||||||||||||||||    
T  54631602 tttttgaagtttccggattacaaaatccggaaaaacccgttactcatttttccaccctttaacaaaagaaaacgtc--attccggattatataatccg 54631697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 443 - 583
Target Start/End: Complemental strand, 38536238 - 38536100
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||| | | |  ||||| || || |||||||||||||  ||| || |||||||||| ||||||||  |||||||   |||||||||||      
T  38536238 cggattatgtaatctggaaacatcatgtaacacgccctattttttgaagtttccgaattacaaaatccggaaaaacccgtaacttcatttttcaccctat 38536139  T
Q  543 aacaaagaaaaacatcatatttcggattatataatccggaa 583  Q
    ||||||| |||||| |  ||||||||||||  |||||||||    
T  38536138 aacaaaggaaaacacc--atttcggattatgaaatccggaa 38536100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 516
Target Start/End: Complemental strand, 8106467 - 8106387
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaa 516  Q
    |||||||||||||||||||| || | || ||||| |   | |||||||||||||  ||||||||||||||||| |||||||    
T  8106467 gggtgttcggattatgtaatacggaaaaatcatgtagcgcgccctattttttgaagttttcggattacaaaatccggaaaa 8106387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 556
Target Start/End: Original strand, 6228944 - 6229023
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    |||||||||||||  ||| ||| ||||||||| ||||||||| |||| |||  |||||||||||  ||||||| ||||||    
T  6228944 ccctattttttgaagtttccgggttacaaaatccggaaaaatccgtagctccatttttcaccctataacaaaggaaaaca 6229023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 556
Target Start/End: Original strand, 25539081 - 25539160
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    |||||||||||||  ||| ||||||||||||| ||||||||  ||||||||  ||||||||| |  ||||||| ||||||    
T  25539081 ccctattttttgaagtttccggattacaaaatccggaaaaacccgtaactccatttttcaccatataacaaaggaaaaca 25539160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 556
Target Start/End: Original strand, 55052752 - 55052831
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    |||||||||||||  ||| ||||||||| ||| ||||||||  ||||||||  |||||||||||  ||||||| ||||||    
T  55052752 ccctattttttgaagtttccggattacataatccggaaaaacccgtaactccatttttcaccctataacaaaggaaaaca 55052831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 549
Target Start/End: Complemental strand, 29822687 - 29822581
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||||| |  ||||| ||  | |  ||||||||||  ||| ||||||||||||| ||||||||  ||||||||  |||||||||||      
T  29822687 cggattatgtaatccgaaaacatcatgtaacgcgctgtattttttgaagtttccggattacaaaatccggaaaaacccgtaactccatttttcaccctat 29822588  T
Q  543 aacaaag 549  Q
    |||||||    
T  29822587 aacaaag 29822581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 556
Target Start/End: Complemental strand, 32441843 - 32441766
Alignment:
Q  479 ctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    |||||||||||  ||| ||||||||||||| | ||||||| | ||||||  |||||||||||  ||||||| ||||||    
T  32441843 ctattttttgaagtttccggattacaaaatccagaaaaatccttaactccatttttcaccctataacaaaggaaaaca 32441766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 556
Target Start/End: Original strand, 42660434 - 42660470
Alignment:
Q  520 cgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  42660434 cgtaactcattttttcaccctttaacaaaggaaaaca 42660470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 436 - 556
Target Start/End: Complemental strand, 6467764 - 6467643
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcgga--ttacaaaattcggaaaaattcgtaactcattttt 533  Q
    ||||||||||||||||||||||||| || ||||| || |||||||||||||||||||||  |||  ||||| ||||||||||||| ||||||||| ||||    
T  6467764 gggtgttcggattatgtaatccgaacaaatcatgtaacacaccctattttttgagatttctggattttacataattcggaaaaatccgtaactca-tttt 6467666  T
Q  534 tcacccttcaacaaagaaaaaca 556  Q
    ||||| || ||||||| ||||||    
T  6467665 tcaccatttaacaaaggaaaaca 6467643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 492 - 556
Target Start/End: Original strand, 28349232 - 28349296
Alignment:
Q  492 ttttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaaca 556  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||    
T  28349232 ttttcggattacaaaattcagaaaaattcgtaactcattttttcaccatttaacaaagaaaaaca 28349296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 443 - 584
Target Start/End: Original strand, 19225697 - 19225837
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattc-gtaactcattttttcaccctt 541  Q
    |||||||||||||||| | |  ||||| ||  |||||||||||||||  |||| |||||||||||| |||||||| || || ||||||||||||||||||    
T  19225697 cggattatgtaatccggaaacatcatgtaacgcaccctattttttgaagtttttggattacaaaatccggaaaaaatccgttactcattttttcaccctt 19225796  T
Q  542 caacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
     ||||||  ||||||||  |||||| ||||||||||| |||||    
T  19225797 taacaaaagaaaacatc--atttcgaattatataatctggaat 19225837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 444 - 584
Target Start/End: Complemental strand, 3936167 - 3936029
Alignment:
Q  444 ggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttca 543  Q
    ||||||||||||||| | |  ||||| ||  | |||||||||||||  ||| ||||||||||||| ||||||||  ||| |||||||||||||| ||| |    
T  3936167 ggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgttactcattttttcactcttta 3936068  T
Q  544 acaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    |||||  ||||||||  ||| ||||||||||||||||||||    
T  3936067 acaaaagaaaacatc--attccggattatataatccggaat 3936029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 443 - 548
Target Start/End: Complemental strand, 43737184 - 43737079
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||||| |  ||||| ||  | |||||||||||||  ||| ||||||||||||| ||||||||| ||| ||||||||||||||||||     
T  43737184 cggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatccgttactcattttttcacccttt 43737085  T
Q  543 aacaaa 548  Q
    ||||||    
T  43737084 aacaaa 43737079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 443 - 577
Target Start/End: Original strand, 37518394 - 37518526
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | | |||||| || || |||||||||||||  |||  |||||| ||||| ||||||||| ||| ||| ||||||||||||||     
T  37518394 cggattatgtaatccggaaacttcatgtaacacgccctattttttgaagtttctggattataaaatccggaaaaatccgttacttattttttcacccttt 37518493  T
Q  543 aacaaagaaaaacatcatatttcggattatataat 577  Q
    || |||  ||||||||  |||| ||||||||||||    
T  37518494 aataaaagaaaacatc--attttggattatataat 37518526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 498 - 584
Target Start/End: Original strand, 42877199 - 42877283
Alignment:
Q  498 gattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    ||||||||||| ||||||||  ||| |||||||||||||||||| ||||||  ||||||||  ||| ||||||||||||||||||||    
T  42877199 gattacaaaatccggaaaaacacgttactcattttttcaccctttaacaaaagaaaacatc--attccggattatataatccggaat 42877283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 443 - 584
Target Start/End: Original strand, 42925740 - 42925879
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||||| |  ||||| ||  | |||||||||||||  ||| |||||||||||||  |||||||  ||||||||  |||||||||||      
T  42925740 cggattatgtaatccgaaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatcaggaaaaacccgtaactccatttttcaccctat 42925839  T
Q  543 aacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    ||||||| |||||| |  ||| ||||||||  ||||||||||    
T  42925840 aacaaaggaaaacacc--attccggattatgaaatccggaat 42925879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 444 - 556
Target Start/End: Original strand, 3304858 - 3304971
Alignment:
Q  444 ggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttc-ggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    ||||||||||||||| | |  ||||| || ||||||||||||||   | |||| |||||||||||| ||||||||| ||||||||  |||||||||||      
T  3304858 ggattatgtaatccggaaatatcatgtaacacaccctatttttttgaagtttctggattacaaaatccggaaaaatccgtaactccatttttcaccctat 3304957  T
Q  543 aacaaagaaaaaca 556  Q
    ||||||| ||||||    
T  3304958 aacaaaggaaaaca 3304971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 443 - 540
Target Start/End: Complemental strand, 47202554 - 47202457
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcaccct 540  Q
    |||||||||||||||| | |  ||||| ||  | |||||||||||||  |||||||||||||||||  |||||||| ||||||||  |||||||||||    
T  47202554 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatctggaaaaatccgtaactccatttttcaccct 47202457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 541
Target Start/End: Original strand, 26555133 - 26555240
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcg--gaaaaattcgtaactcattttt 533  Q
    |||||||||||||| ||||||| || || ||||| ||  | |||||||||||| ||| ||||||||||||||| ||   |||||| | ||||| ||||||    
T  26555133 gggtgttcggattaggtaatccaaaaaaatcatgtaacgcgccctattttttgtgatattcggattacaaaatccgaaaaaaaatccttaactaattttt 26555232  T
Q  534 tcaccctt 541  Q
    ||||||||    
T  26555233 tcaccctt 26555240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 548
Target Start/End: Original strand, 28230601 - 28230671
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaa 548  Q
    |||||||||||||  ||| ||||||||||||| ||||||||| ||| ||||||||||| |||||| ||||||    
T  28230601 ccctattttttgaagtttccggattacaaaatccggaaaaatccgttactcatttttt-accctttaacaaa 28230671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 526
Target Start/End: Complemental strand, 8154966 - 8154876
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaact 526  Q
    |||| |||||||||||||||||| | |  ||||| ||  | |||||||||||||  ||| ||||||||||||| ||||||||| |||||||    
T  8154966 gggttttcggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatccgtaact 8154876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 443 - 560
Target Start/End: Original strand, 36468636 - 36468751
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||| |||  || |||| || || |||||||||||||  ||| |  |||||||||| ||||||||| ||| ||||||||||||| ||||     
T  36468636 cggattatgtaatctgaaacat-catgtaacacgccctattttttgaagtttccatattacaaaatccggaaaaatccgttactcattttttca-ccttt 36468733  T
Q  543 aacaaagaaaaacatcat 560  Q
    ||||||  ||||||||||    
T  36468734 aacaaaagaaaacatcat 36468751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 541
Target Start/End: Complemental strand, 9151840 - 9151776
Alignment:
Q  477 ccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcaccctt 541  Q
    |||||||||||||  ||| ||||||||||||| ||||||||   || ||||||||||||||||||    
T  9151840 ccctattttttgaagtttccggattacaaaatccggaaaaacctgttactcattttttcaccctt 9151776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 560
Target Start/End: Complemental strand, 28346174 - 28346091
Alignment:
Q  476 accctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcat 560  Q
    |||||| |||||||  |||  ||||||||||||||||||| || |||||||||||||||  | ||| ||||||| ||||||||||    
T  28346174 accctactttttgaagtttctggattacaaaattcggaaacatccgtaactcatttttt-tctctttaacaaaggaaaacatcat 28346091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 508
Target Start/End: Original strand, 31985610 - 31985684
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacacccta--ttttttgagattttcggattacaaaat 508  Q
    ||||||||| ||||||||||||||| || ||||| ||  | |||||  ||||||||| |||||||||||||||||    
T  31985610 gggtgttcgaattatgtaatccgaaaaaatcatgtaacgcgccctattttttttgaggttttcggattacaaaat 31985684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 556
Target Start/End: Complemental strand, 36629210 - 36629151
Alignment:
Q  498 gattacaaaattcggaaaaattcgtaactcattttttcacccttcaac-aaagaaaaaca 556  Q
    ||||||||||| ||||||||| ||| |||||||||||||||||  ||| |||||||||||    
T  36629210 gattacaaaatccggaaaaatccgttactcattttttcaccctctaacaaaagaaaaaca 36629151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 540
Target Start/End: Original strand, 24042287 - 24042384
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcaccct 540  Q
    |||||||||||||||| | |  ||||| ||  | || ||||||||||  ||| ||||||||||||| ||||||||  ||||||||  |||||||||||    
T  24042287 cggattatgtaatccggaaacatcatgtaacgcgccttattttttgaagtttccggattacaaaatccggaaaaacccgtaactccatttttcaccct 24042384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 540
Target Start/End: Complemental strand, 31643101 - 31643004
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcaccct 540  Q
    |||||||||||||||| | |  ||||| || ||||||||||||||||  ||| |  ||||||| || | ||||||| ||||||||  |||||||||||    
T  31643101 cggattatgtaatccggaaacatcatgtaacacaccctattttttgaagtttccaaattacaagatccagaaaaatccgtaactccatttttcaccct 31643004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 508
Target Start/End: Original strand, 33574126 - 33574198
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaat 508  Q
    |||| |||||||||||||||||||| |  ||||| ||  ||||||||||||| |  ||| |||||||||||||    
T  33574126 gggttttcggattatgtaatccgaaaacatcatgtaacgcaccctattttttaaagtttccggattacaaaat 33574198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 547
Target Start/End: Complemental strand, 36408394 - 36408326
Alignment:
Q  480 tattttttgagattttcggattacaaaattcggaaaaattcgtaactcatt-ttttcacccttcaacaa 547  Q
    ||||||||||  |||  |||||||||||| ||||||||| ||| ||||||| ||||||||||| |||||    
T  36408394 tattttttgaagtttctggattacaaaatccggaaaaatccgttactcatttttttcaccctttaacaa 36408326  T

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Target: scaffold0182 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 475 - 585
Target Start/End: Complemental strand, 23150 - 23043
Alignment:
Q  475 caccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatat 574  Q
    |||||||||||||||  ||| ||||||| ||||||||||||||| ||| ||||| |||||||||||||||||||  |||||||   ||| ||||||||||    
T  23150 caccctattttttgaagtttccggattataaaattcggaaaaatccgttactca-tttttcacccttcaacaaaagaaaacat--aattacggattatat 23054  T
Q  575 aatccggaata 585  Q
    |||| ||||||    
T  23053 aatctggaata 23043  T

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Target: scaffold0137 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 436 - 556
Target Start/End: Original strand, 9589 - 9709
Alignment:
Q  436 gggtgttcggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttc 535  Q
    |||| |||||||||||||||||| | |  ||||| ||  |  ||||||||||||  ||| ||||||||||||||||||||||  ||||||||  ||||||    
T  9589 gggttttcggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaattcggaaaaacccgtaactctatttttc 9688  T
Q  536 acccttcaacaaagaaaaaca 556  Q
    |||||  ||||||| ||||||    
T  9689 accctataacaaaggaaaaca 9709  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 499 - 580
Target Start/End: Complemental strand, 140612 - 140533
Alignment:
Q  499 attacaaaattcggaaaaattcgtaactcattttttcacccttcaacaaagaaaaacatcatatttcggattatataatccg 580  Q
    |||||||||| ||||||||| | | ||||||||||||||| || ||||||  ||||||||  ||| ||||||||||||||||    
T  140612 attacaaaatccggaaaaatcctttactcattttttcaccttttaacaaaagaaaacatc--attccggattatataatccg 140533  T

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Target: scaffold0508 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 548
Target Start/End: Original strand, 3494 - 3601
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaa--ttcgtaactcattttttcaccct 540  Q
    |||||||||||||||| | |  ||||| ||  | |||||||||||||  |||   |||||||||||||| |||||  ||||| |||||||||||||||||    
T  3494 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttctagattacaaaattcgaaaaaaaattcgttactcattttttcaccct 3593  T
Q  541 tcaacaaa 548  Q
    | ||||||    
T  3594 ttaacaaa 3601  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 584
Target Start/End: Original strand, 142062 - 142200
Alignment:
Q  443 cggattatgtaatccgaagaattcatgcaagacaccctattttttgagattttcggattacaaaattcggaaaaattcgtaactcattttttcacccttc 542  Q
    |||||||||||||||| | |  ||||| ||  | |||||||||||||  ||| |||||||||||||  ||||||||  || || || ||||||||||||     
T  142062 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatctgttacaca-tttttcacccttt 142160  T
Q  543 aacaaagaaaaacatcatatttcggattatataatccggaat 584  Q
    ||||||  ||||||||  ||| || ||||||||||| |||||    
T  142161 aacaaaagaaaacatc--attccgaattatataatctggaat 142200  T

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