View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13715_low_40 (Length: 232)
Name: NF13715_low_40
Description: NF13715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13715_low_40 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 24237259 - 24237490
Alignment:
| Q |
1 |
gtaaggatctaaaaatagggatattttcaatagttaatgttgctccagtacagaaccgaagagcaatgacagtaccaatnnnnnnncatggttgttgcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24237259 |
gtaaggatctaaaaatagggatattttcaatagttaatgttgctccagtacagaaccgaagagcaatgacagtaccaataaaaaaacatggttgttgcta |
24237358 |
T |
|
| Q |
101 |
ctagacagcgaaatggattttggaacttatcaaaggtactatttataatcccacaggtaccggaaccattaaaagaacacccaataatttattaggatat |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24237359 |
ctagacagcgaaatgaattttggaacttatcaaaggtactatttataatcccacaggtaccggaaccattaaaagaacactcaataatttattaggatat |
24237458 |
T |
|
| Q |
201 |
agtaagtatttgaaatacgctaacagaatacc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24237459 |
agtaagtatttgaaatacgctaacagaatacc |
24237490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 18338906 - 18338845
Alignment:
| Q |
132 |
aaaggtactatttataatcccacaggtaccggaaccattaaaagaacacccaataatttatt |
193 |
Q |
| |
|
||||||||| || |||||||||| ||||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
18338906 |
aaaggtactgttaataatcccacgggtactgaaaccattaaaagaacgcccaataatttatt |
18338845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 18339026 - 18338921
Alignment:
| Q |
24 |
ttttcaatagttaatgttgctccagtacagaaccgaagagcaatgacagtaccaatnnnnnnncatggttgttgctactagacagcgaaatggattttgg |
123 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||| |||||| | ||| |||||||| | ||||||||||||| ||| ||||||||| |||||| |
|
|
| T |
18339026 |
ttttcaataggtaatgttgctccaatacccaaccaaagagccacgacggtaccaatcaaaaag-acggttgttgctactggacggcgaaatgggttttgg |
18338928 |
T |
|
| Q |
124 |
aacttat |
130 |
Q |
| |
|
||||||| |
|
|
| T |
18338927 |
aacttat |
18338921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University