View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13716_high_3 (Length: 477)

Name: NF13716_high_3
Description: NF13716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13716_high_3
NF13716_high_3
[»] chr1 (3 HSPs)
chr1 (79-477)||(701362-701761)
chr1 (19-81)||(701277-701340)
chr1 (249-319)||(43781900-43781970)
[»] chr7 (1 HSPs)
chr7 (324-468)||(432738-432882)
[»] chr5 (2 HSPs)
chr5 (369-477)||(3828147-3828255)
chr5 (369-477)||(3841720-3841828)
[»] chr6 (3 HSPs)
chr6 (249-321)||(14486315-14486387)
chr6 (257-320)||(27982492-27982555)
chr6 (272-317)||(12488436-12488481)
[»] chr4 (1 HSPs)
chr4 (255-319)||(34981423-34981487)
[»] chr8 (1 HSPs)
chr8 (257-321)||(23769103-23769167)
[»] chr3 (1 HSPs)
chr3 (259-319)||(53038813-53038873)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 79 - 477
Target Start/End: Original strand, 701362 - 701761
Alignment:
Q  79 gtatgattcatggtcgtctctcaatagactctaaatatcacattaaaactcaaataaagaaagtaagggatgcaaaacattcactaaaaccgtgtttgag 178  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  701362 gtatgatgcatggtcgtctctcaatagagtctaaatatcacattaaaactcgaataaagaaagtaagggatgcaaaacattcactaaaaccgtgtttgag 701461  T
Q  179 aagccctggatgatactacatgtaagtaactaattgtagtgagagagggnnnnnnn-tcttgattttcgcacttcttctagcaagttttgctctcaccca 277  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||        |||||||||  || ||||||| ||||| |||||||||||||||    
T  701462 aagccttggatgatactacatgtaagtaactaattgtagtgagagagggaaaaaaaatcttgatttctgctcttcttccagcaaattttgctctcaccca 701561  T
Q  278 gtcaaactgaccaaaatacgcatgtgatggttaactaacgcaaacactagttttaaaacactcttaccttctgctacatgcttcatctgcctcaatctag 377  Q
      ||||||||||||||||||| |    | |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||    
T  701562 accaaactgaccaaaatacgcctacattagttaactaacgcaaacactagttttaaaacactcttactttctgctatatgcttcagctgcctcaatctag 701661  T
Q  378 tgatttgtaagcttcataaatgatctatctgtatggtatattaagccatctgagcaattattgctttctaaaagaacatgctcagtatgatttgatattt 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  701662 tgatttgtaagcttcataaatgatctatctgtatggtatattaagccacctgagcaattattgctttctaaaagaacatgctgagtatgatttgatattt 701761  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 701277 - 701340
Alignment:
Q  19 tgaaagggggcaaccgaagttacaacacagtttgctgaattc-ttttctagctggagaatagta 81  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||    
T  701277 tgaaagggggcaaccgaagttacaacacagtttaatgaattctttttctagctgaagaatagta 701340  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 43781900 - 43781970
Alignment:
Q  249 cttcttctagcaagttttgctctcacccagtcaaactgaccaaaatacgcatgtgatggttaactaacgca 319  Q
    ||||| |||||||||||||||| | ||||  ||||||||||||||||| |||| | | |||||| ||||||    
T  43781900 cttctcctagcaagttttgctcccgcccaaccaaactgaccaaaatactcatgcgttagttaacaaacgca 43781970  T

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Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 324 - 468
Target Start/End: Complemental strand, 432882 - 432738
Alignment:
Q  324 ctagttttaaaacactcttaccttctgctacatgcttcatctgcctcaatctagtgatttgtaagcttcataaatgatctatctgtatggtatattaagc 423  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  432882 ctagttttaaaacacccttaccttctgctacatgcttcagctgtctcaatttagtgatttgtaagcttcataaatgatctatctgtatgatatattaagc 432783  T
Q  424 catctgagcaattattgctttctaaaagaacatgctcagtatgat 468  Q
     | ||||| |||||||||||||||||||||||||||| |||||||    
T  432782 tacctgagtaattattgctttctaaaagaacatgctctgtatgat 432738  T

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Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 369 - 477
Target Start/End: Complemental strand, 3828255 - 3828147
Alignment:
Q  369 tcaatctagtgatttgtaagcttcataaatgatctatctgtatggtatattaagccatctgagcaattattgctttctaaaagaacatgctcagtatgat 468  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||  || ||||| |||||||||||||||||||||||||||||||||    
T  3828255 tcaacctagtgatttgtaagcttcataattgatctatctgtatggtatattaagccgcctcagcaactattgctttctaaaagaacatgctcagtatgat 3828156  T
Q  469 ttgatattt 477  Q
    |||||||||    
T  3828155 ttgatattt 3828147  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 369 - 477
Target Start/End: Complemental strand, 3841828 - 3841720
Alignment:
Q  369 tcaatctagtgatttgtaagcttcataaatgatctatctgtatggtatattaagccatctgagcaattattgctttctaaaagaacatgctcagtatgat 468  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||  || ||||| |||||||||||||||||||||||||||||||||    
T  3841828 tcaacctagtgatttgtaagcttcataattgatctatctgtatggtatattaagccgcctcagcaactattgctttctaaaagaacatgctcagtatgat 3841729  T
Q  469 ttgatattt 477  Q
    |||||||||    
T  3841728 ttgatattt 3841720  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 14486315 - 14486387
Alignment:
Q  249 cttcttctagcaagttttgctctcacccagtcaaactgaccaaaatacgcatgtgatggttaactaacgcaaa 321  Q
    ||||||| ||||||||| |||| ||||||| ||||||||||||||||   ||| | | |||||||||||||||    
T  14486315 cttcttccagcaagtttcgctcccacccagccaaactgaccaaaataactatgcgttagttaactaacgcaaa 14486387  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 27982492 - 27982555
Alignment:
Q  257 agcaagttttgctctcacccagtcaaactgaccaaaatacgcatgtgatggttaactaacgcaa 320  Q
    ||||||||| |||| || ||||||||||||| |||||||| |||| | | ||||||||||||||    
T  27982492 agcaagtttcgctcccatccagtcaaactgatcaaaatactcatgagttagttaactaacgcaa 27982555  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 12488436 - 12488481
Alignment:
Q  272 cacccagtcaaactgaccaaaatacgcatgtgatggttaactaacg 317  Q
    |||||| |||||||||||||||||| |||||| | |||||||||||    
T  12488436 cacccaatcaaactgaccaaaatactcatgtgttagttaactaacg 12488481  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 34981423 - 34981487
Alignment:
Q  255 ctagcaagttttgctctcacccagtcaaactgaccaaaatacgcatgtgatggttaactaacgca 319  Q
    ||||||||||| |||| ||||||| ||||||||||||||||| | || | | |||||||||||||    
T  34981423 ctagcaagtttcgctcccacccagccaaactgaccaaaatacccctgcgttagttaactaacgca 34981487  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 23769167 - 23769103
Alignment:
Q  257 agcaagttttgctctcacccagtcaaactgaccaaaatacgcatgtgatggttaactaacgcaaa 321  Q
    ||||| ||| ||||||||||| ||||||||| |||||||  |||| | | |||||||||||||||    
T  23769167 agcaaatttcgctctcacccaatcaaactgatcaaaatatccatgcgctagttaactaacgcaaa 23769103  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 53038813 - 53038873
Alignment:
Q  259 caagttttgctctcacccagtcaaactgaccaaaatacgcatgtgatggttaactaacgca 319  Q
    ||||||| |||| ||||||  ||||||||||||||||| | |||| | |||||||||||||    
T  53038813 caagtttcgctcccacccaaccaaactgaccaaaatacccctgtgttagttaactaacgca 53038873  T

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