View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13716_high_4 (Length: 431)
Name: NF13716_high_4
Description: NF13716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13716_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 45321581 - 45321882
Alignment:
| Q |
20 |
ataggcgtatagcgatagaatattgtatttatacgtcattttttagttactctgttttcccactaatttggcacaattttgtctgttagcttttatttat |
119 |
Q |
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| T |
45321581 |
ataggcgtatagcgatagaatattgtatttataggtcattttttagttactctgttttcccactaatttggcacaattttgtctgttagcttttatttat |
45321680 |
T |
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| Q |
120 |
acgtcatttgattgctgcagaaagacaataattgtagaaaagaaaactaaatgagagttgacctcatgagaagtttgcctaaatacagaatttcagctgc |
219 |
Q |
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| T |
45321681 |
acgtcatttgattgctgcagaaagacaataattgtagaaaagaaaactaaatgagagttgacctcatgagaagtttgcctaaatacagaatttcagctgc |
45321780 |
T |
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| Q |
220 |
attatatgattgtaaattttacaaaatcaatgcttaaacaaattaattgattttttagaggtctatcctccaaaaataatcgaaatcattgaacttatca |
319 |
Q |
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| T |
45321781 |
attatatgattgtaaattttacaaaatcaatgcttaaacaaattaattgattttttagaggtctatcctccaaaaataatcgaaatcattgaacttatca |
45321880 |
T |
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| Q |
320 |
tc |
321 |
Q |
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|| |
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| T |
45321881 |
tc |
45321882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 361 - 431
Target Start/End: Original strand, 45321922 - 45321992
Alignment:
| Q |
361 |
gctgcacgtcaagttcaattgaattaatctcattagtgtctcaactatatgactctattagcatattccat |
431 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45321922 |
gctgcacgtcaagttcaattgaattaatctcattagtgtctcaactatatgactctattagcatattccat |
45321992 |
T |
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