View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13716_low_1 (Length: 1215)
Name: NF13716_low_1
Description: NF13716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13716_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 721; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 357 - 1198
Target Start/End: Complemental strand, 40286763 - 40285929
Alignment:
| Q |
357 |
accgtttcatcaacccaatccatatctcttactattctatcttcttcctaagattcaatacaatggcctctctttcagccacctctcttacctttcaacc |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286763 |
accgtttcatcaacccaatccatatctcttactattctatcttcttcctaagcttcaatacaatggcctctctttcagccacctctcttacctttcaacc |
40286664 |
T |
|
| Q |
457 |
ctctttcaaattctctacaagcactaaccaggttcaaatttttcatcttcctctcttaatgcacatacttacttcttatttatttgtatctacacttcaa |
556 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286663 |
ctctttcaaattctctacaagcactaaccaggttcaaatttt-catcttcctctcttaatgcacatacttacttcttatttatttgtatctacacttcaa |
40286565 |
T |
|
| Q |
557 |
taggttcgtgtgactagaaatgctatattttttgtctcgtaattaagttggtaaaagactacggagacatttgatatgttgtggcgcacgtttgaccttg |
656 |
Q |
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||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
40286564 |
taggttcgtgtgactagaaatgctatattttttgtgtcataa----gttggtaaaagactacggagacatttgatatgttgtggctcacggttgaccttg |
40286469 |
T |
|
| Q |
657 |
caatgttcatcttttccacacttactgtatatgatgttctttgnnnnnnnnnntgttgctatgcttttggtatagtatatgttaaatgcatgaaatgact |
756 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286468 |
caatgttcatcttttccacacttactgtatatgatgttctttgaaaaaaaaa-tgttactatgcttttggtatagtatatgttaaatgcatgaaatgact |
40286370 |
T |
|
| Q |
757 |
tggttaaagttttctccgaaaaataaactacttttggaaatttctctatagtaaattttttgttaaacgcaaggacgtgttaacttaggtgttggaaatt |
856 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286369 |
tggttaaagttttctccgaaaaataaactacttttggaaatttctctatagtaaattttttgttaaacgcaaggacgtgttaacttaggtgttggaaatt |
40286270 |
T |
|
| Q |
857 |
gaagtatatagcttaattacattggtaggttcagaacatagcaagagaacatacacgttaatttgttaaggttttggttcaatactaaatctcaagttca |
956 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286269 |
gaagtatatagcttaattacattggtaggttcagaacatagcaagagaacatacacgttaatttgttaaggttttggttcaatactaaatctcaagttca |
40286170 |
T |
|
| Q |
957 |
cctttgtattttgttgctttttctatttggataaacaattaagcctttatagcataaacacttatcatagctattgttacaacaaaagataaaataagtc |
1056 |
Q |
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| T |
40286169 |
cctttgtattttgttgccttttctatttggataaacaattaagcctttatagcataaacacttatcatagctattgttacaacaaaagataaaataagtc |
40286070 |
T |
|
| Q |
1057 |
cnnnnnnntcatataagttgttttcatatgttatcctatatagcttatgaaaataacttatgaacatgttataatcagtagataaactcatattaaaaat |
1156 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286069 |
aaaaaaaatcatataagttgttttcatatgttatcctatatagcttatgaaaataacttatgaacatgttataatcagtagataaactcatattaaaaat |
40285970 |
T |
|
| Q |
1157 |
aatgaatatacttttggtggtggacatcatattagataaaac |
1198 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40285969 |
aatgaatatacttttggtggtggacatcata-tagataaaac |
40285929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 40287112 - 40286789
Alignment:
| Q |
14 |
atgaatatgaaaggaacctcactagttgtagaatattagaattattaatagtcaatacctattaaagatgactttataaaattgttacatttatttgttc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40287112 |
atgaatatgaaaggaacctcactagttgtagaatattagaattattaatagtcaatagctattaaagatgactttataaaattgttacatttatttgttc |
40287013 |
T |
|
| Q |
114 |
gtaaattaattttcttaatctatatctttgaaaaaaggtaattgcacatatgtgcattgaaaatgtgcattagcatgatgatgatgattggatagatagt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40287012 |
ataaattaattttcttaatctatatctttgaaaaaaggtaattgcacatatgtgcattgaaaatgtgcattagcatgatgatgatgattggatagatagt |
40286913 |
T |
|
| Q |
214 |
taccttccaagagcaaatgttcaccactcattcatacatacatcacccataataagccaattttgttcctgacatggctttactttccaactaagcacca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286912 |
taccttccaagagcaaatgttcaccactcattcatacatacatcacccataataagccaattttgttcctgacatggctttactttccaactaagcacca |
40286813 |
T |
|
| Q |
314 |
gctagataacacacttatctacct |
337 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
40286812 |
gctagataacacacttatctacct |
40286789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1071 - 1112
Target Start/End: Complemental strand, 26284862 - 26284821
Alignment:
| Q |
1071 |
aagttgttttcatatgttatcctatatagcttatgaaaataa |
1112 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||||||||| |
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|
| T |
26284862 |
aagttgttttcgtaagttatcctgtatagcttatgaaaataa |
26284821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 993 - 1051
Target Start/End: Original strand, 17942059 - 17942117
Alignment:
| Q |
993 |
aattaagcctttatagcataaacacttatcatagctattgttacaacaaaagataaaat |
1051 |
Q |
| |
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|||||||| ||||||||||| |||||||| || ||||| ||| ||||||||||||||| |
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|
| T |
17942059 |
aattaagcacttatagcataagcacttatcttaactatttttaaaacaaaagataaaat |
17942117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1067 - 1112
Target Start/End: Original strand, 5924054 - 5924099
Alignment:
| Q |
1067 |
atataagttgttttcatatgttatcctatatagcttatgaaaataa |
1112 |
Q |
| |
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|||||||||||||||||| ||||||||| | |||||||| |||||| |
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| T |
5924054 |
atataagttgttttcataagttatcctagagagcttatggaaataa |
5924099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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