View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13716_low_10 (Length: 344)
Name: NF13716_low_10
Description: NF13716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13716_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 8322804 - 8322487
Alignment:
| Q |
17 |
aatttaagcatacgatcaaggtgtcaagattttgagaaggaacagacagttaagattctaatgattaatgtannnnnnnnnnngtttcaacgttaaacaa |
116 |
Q |
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| T |
8322804 |
aatttaagcatacgatcaaagtgtcaagattttgagaaggaacagacagttaagattctagcaattaatgt--ctttttttttgtttcaacgttaaacaa |
8322707 |
T |
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| Q |
117 |
taatttttcttacatattaatgttaattgtttattgtaggccaaaatgtttcactacatgagatttttgtttgcacagttattccatattattaatgcaa |
216 |
Q |
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| T |
8322706 |
taatttttcttacatattaatgttaattgattattgtaggccaaaatgtttcactacatgagatttttgtttgcacagttattccatattattaatgcaa |
8322607 |
T |
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| Q |
217 |
acttaatgccacactatacgagattatgcatctaataactctacttaatattgtcttccaattaaaattattatcagcagtgctaagtcccttccaagag |
316 |
Q |
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| T |
8322606 |
acttaatgccacattatacgagattatgcatc---taactctacttaatattgtcttccaattaaaattattatcagcagtactaagtcccttccaagag |
8322510 |
T |
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| Q |
317 |
ataatactaacacaggttctgct |
339 |
Q |
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|||||||||||| ||||| |||| |
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| T |
8322509 |
ataatactaacagaggttatgct |
8322487 |
T |
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