View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13716_low_11 (Length: 337)
Name: NF13716_low_11
Description: NF13716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13716_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 3822391 - 3822699
Alignment:
| Q |
18 |
atctatagtttataaaagtgattataattgaaaacgattggttcattgaaaaatcaaccacttttcaatttgataccaattatatcttgaaacatgaatg |
117 |
Q |
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| T |
3822391 |
atctatagtt-ataaaagtgattataattgaaaacgattggttcattgaaaaatcaaccacttttcaatttgataccaattatatcttgaaacatgaatg |
3822489 |
T |
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| Q |
118 |
gaaaaaactgaagtgtctttagttaagattgagtttgcctttaatacctcaaatttgattcatccattggccactccgatggtgggaatgatgagtggat |
217 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3822490 |
gaaaaaaatgaagtgtctt-agttaagattgagtttgcctttaatacctcaaatttgattcatccattggccactccgatggtgggaatgatgagtggat |
3822588 |
T |
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| Q |
218 |
aagaatatataaggaaaatgtcatttagcaattatgggctgcttgtcttttggatttgaaccgtcaaatatacaaatattggttcttaaattcagaattt |
317 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3822589 |
aagaatatatgaggaaaatgtcatttagcaattatgggctgcttgtcttttggatttgaaccgtcaaatatacaaatattggttcttaaattcaggattt |
3822688 |
T |
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| Q |
318 |
tcatttcactc |
328 |
Q |
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|||||| |||| |
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| T |
3822689 |
tcatttgactc |
3822699 |
T |
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