View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13716_low_12 (Length: 297)
Name: NF13716_low_12
Description: NF13716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13716_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 267248 - 267510
Alignment:
| Q |
20 |
gaaatgtcttccaagggaatgaaaccatcaacggtcttttaacttaatttaaagtttctaacaggttgtttatcttgttttcggttcaaattaatcttgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
267248 |
gaaatgtcttccaagggaatgaaaccatcaacggtcttttaacttaatttaaagtttctaacaggttgtttatcttgttttcggttcaaattaatcttgc |
267347 |
T |
|
| Q |
120 |
tttaccaaaaacgaaaagcgcaatttgtccaagccaggttgttcacttcgtggtgtgctataattatctctctatcatatcatatcatgtcaatcacagt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
267348 |
tttaccaaaaacgaaaagcgcaatttgtccaagccaggttgttcacttcttggtgtgctataattatctctctatcatatcatatcatgtcaatcacaat |
267447 |
T |
|
| Q |
220 |
gaagcaaacacaatgtcaagttcaaagtccaacctacactcacgctacgctcgccacaggttc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
267448 |
gaagcaaacacaatgtcaagttcaaagtccaacctacactcacgctacgctcgccacaagttc |
267510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University