View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13716_low_14 (Length: 268)

Name: NF13716_low_14

Description: NF13716

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13716_low_14

[»] chr4 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 182; E-Value: 2e-98

Query Start/End: Original strand, 78 - 259

Target Start/End: Complemental strand, 43094062 - 43093881

Alignment:

Q	78	agaaggaagagaaaagcagtgatggaactcatcaattccctttgaggcctgaagctgaagattgttcattttatatgaagactgggagttgcaagtttgg	177	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43094062	agaaggaagagaaaagcagtgatggaactcatcaattccctttgaggcctgaagctgaagattgttcattttatatgaagactgggagttgcaagtttgg	43093963	T

Q	178	attcaactgcaaatttaatcaccccattaggaggaaaaaccaaaaccaggttatttattttctctttcttctcttgtatatt	259	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43093962	attcaactgcaaatttaatcaccccattaggaggaaaaaccaaaaccaggttatttattttctctttcttctcttgtatatt	43093881	T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 47; E-Value: 7e-18

Query Start/End: Original strand, 119 - 201

Target Start/End: Complemental strand, 34207461 - 34207379

Alignment:

Q	119	ttgaggcctgaagctgaagattgttcattttatatgaagactgggagttgcaagtttggattcaactgcaaatttaatcaccc	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	34207461	ttgaggcctgaagctgaagactgttctttttatctcaagactggaacttgcaaatttggattcaattgcaagtttaatcaccc	34207379	T

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