View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13716_low_15 (Length: 267)
Name: NF13716_low_15
Description: NF13716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13716_low_15 |
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| [»] scaffold0786 (1 HSPs) |
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| [»] scaffold0390 (2 HSPs) |
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| [»] scaffold1678 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 32241470 - 32241707
Alignment:
| Q |
18 |
gaaaaacaatgtgatactaccaacttatataggagcatgcaataatcttgttccaatcgtttgtgtgtggtaattaactaattatggagtttgttatatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32241470 |
gaaaaacaatgtgatactaccaacttatataggagcatgcaataatcttggtccaatcgtttgtgtgtggtaattaactaattatggagtttgttatatt |
32241569 |
T |
|
| Q |
118 |
tggaatgagaaagacttgctcatattttgatttttcaccattggtttatttgacttaacaaatgcattagataaaattttggagcctctttcaaatttgt |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32241570 |
tggaatgagaaagacttgctcatattttgatttttcaccattggtttatttgacttaacaaatgcattagataaaattttggagcctctttcaaatttgt |
32241669 |
T |
|
| Q |
218 |
atagccaatttggagaaataaatataattactatcaat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
32241670 |
atagccaatttggagaaataaatataattactatcaat |
32241707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 22139333 - 22139561
Alignment:
| Q |
18 |
gaaaaacaatgtgatactaccaa--cttatataggagcatgcaataatcttgttccaatcgtttgtgtgtggtaattaactaattatggagtttgttata |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22139333 |
gaaaaacaatgtgatactaccaagacttatataggagcatgcaataatcttggtccaatcgtttgtgtgtggtaattaactaattatggagtttgttata |
22139432 |
T |
|
| Q |
116 |
tttggaatgagaaagacttgctcatattttgatttttcaccattggtttatttgacttaacaaatgcattagataaaattttggagcctctttcaaattt |
215 |
Q |
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|
|||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |
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| T |
22139433 |
tttggaatgagaaacacttgctcatattttgattttccgccattggtttatttgacttaacaaatgaatgagataaaactttggagcctctttcaaattt |
22139532 |
T |
|
| Q |
216 |
gtatagccaatttggagaaataaatataa |
244 |
Q |
| |
|
|||| ||| ||||||| |||||||||||| |
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| T |
22139533 |
gtattgcctatttggaaaaataaatataa |
22139561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 32295139 - 32294904
Alignment:
| Q |
18 |
gaaaaacaatgtgatactaccaa--cttatataggagcatgcaataatcttgttccaatcgtttgtgtgtggtaattaactaattatggagtttgttata |
115 |
Q |
| |
|
||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32295139 |
gaaaaacaatgggatattaccaagtcttatataggagcatgcaataatcttggtccaatcgtttgtgtgtggtaattaactaattatggattttgttata |
32295040 |
T |
|
| Q |
116 |
tttggaatgagaaagacttgctcatattttgatttttcaccattggtttatttgacttaacaaatgcattagataaaattttggagcctctttcaaattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||||| |||||||||||| || ||||| |
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| T |
32295039 |
tttggaatgagaaagacttgctcatattttgagtttcaaccattggtttatttgacttaacaaatgaatgagataaaactttggagcctctatccaattt |
32294940 |
T |
|
| Q |
216 |
gtatagccaatttggagaaataaatataattactat |
251 |
Q |
| |
|
|||| ||| ||||| | | | ||||||||||||||| |
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|
| T |
32294939 |
gtattgcctatttgaaaataaaaatataattactat |
32294904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 24433831 - 24434061
Alignment:
| Q |
18 |
gaaaaacaatgtgatactaccaa--cttatataggagcatgcaataatcttgttccaatcgtttgtgtgtggtaattaactaattatggagtttgttata |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
24433831 |
gaaaaacaatgtgatactaccaagacttatat-------tgcaataatcttggtccaatcgtttgtgtgtggtaattaacaaattatggagttttttata |
24433923 |
T |
|
| Q |
116 |
tttggaatgagaaagacttgctcatattttgatttttcaccattggtttatttgacttaacaaatgcattagataaaattttggagcctctttcaaattt |
215 |
Q |
| |
|
||| |||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |
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| T |
24433924 |
tttagaatcagaaagatttgctcatattttgattttccaccaatggtttatttgacttaacaaatgaatgagataaaatttcggagcctctttcaaattt |
24434023 |
T |
|
| Q |
216 |
gtatagccaatttggagaaataaatataattactatca |
253 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||||||||| |
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| T |
24434024 |
gtattgcctatttggaaaaataaatataattactatca |
24434061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 32276277 - 32276212
Alignment:
| Q |
18 |
gaaaaacaatgtgatactaccaact---tatataggagcatgcaataatcttgttccaatcgtttg |
80 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||| | |||| |||||||||||| |
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|
| T |
32276277 |
gaaaaacaatgtgatactaccaagtctttatataggagcatgcaagagccttgatccaatcgtttg |
32276212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 32276213 - 32276180
Alignment:
| Q |
102 |
tggagtttgttatatttggaatgagaaagacttg |
135 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
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| T |
32276213 |
tggagtttgctatatttggaatgagaaagacttg |
32276180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0786 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0786
Description:
Target: scaffold0786; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 3399 - 3171
Alignment:
| Q |
18 |
gaaaaacaatgtgatactaccaa--cttatataggagcatgcaataatcttgttccaatcgtttgtgtgtggtaattaactaattatggagtttgttata |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3399 |
gaaaaacaatgtgatactaccaagacttatataggagcatgcaataatcttggtccaatcgtttgtgtgtggtaattaactaattatggagtttgttata |
3300 |
T |
|
| Q |
116 |
tttggaatgagaaagacttgctcatattttgatttttcaccattggtttatttgacttaacaaatgcattagataaaattttggagcctctttcaaattt |
215 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
3299 |
tttggaatgagaaacacttgctcatattttgattttccgccattggtttatttgacttaacaaatgaatgagataaaactttggagcctctttcaaattt |
3200 |
T |
|
| Q |
216 |
gtatagccaatttggagaaataaatataa |
244 |
Q |
| |
|
|||| ||| ||||||| |||||||||||| |
|
|
| T |
3199 |
gtattgcctatttggaaaaataaatataa |
3171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: scaffold0390
Description:
Target: scaffold0390; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 1931 - 1703
Alignment:
| Q |
18 |
gaaaaacaatgtgatactaccaa--cttatataggagcatgcaataatcttgttccaatcgtttgtgtgtggtaattaactaattatggagtttgttata |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1931 |
gaaaaacaatgtgatactaccaagacttatataggagcatgcaataatcttggtccaatcgtttgtgtgtggtaattaactaattatggagtttgttata |
1832 |
T |
|
| Q |
116 |
tttggaatgagaaagacttgctcatattttgatttttcaccattggtttatttgacttaacaaatgcattagataaaattttggagcctctttcaaattt |
215 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| | ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |
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|
| T |
1831 |
tttggaatgagaaacatttgctcatattttgattttccgccattggtttatttgacttaacaaatgaatgagataaaactttggagcctctttcaaattt |
1732 |
T |
|
| Q |
216 |
gtatagccaatttggagaaataaatataa |
244 |
Q |
| |
|
|||| ||| ||||||| |||||||||||| |
|
|
| T |
1731 |
gtattgcctatttggaaaaataaatataa |
1703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 14915 - 14684
Alignment:
| Q |
18 |
gaaaaacaatgtgatactaccaa--cttatataggagcatgcaataatcttgttccaatcgtttgtgtgtggtaattaactaattatggagtttgttata |
115 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14915 |
gaaaaacaatgtcatactaccaagacttatataggagcatgcaataatcttggtccaatcgtttgtgtgtggtaattaactaattatggattttgttata |
14816 |
T |
|
| Q |
116 |
tttggaatgagaaagacttgctcatattttgatttttcaccattggtttatttgacttaacaaatgcattagataaaattttggagcctctttcaaattt |
215 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | ||||| ||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |
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|
| T |
14815 |
tttggaatgagaaacacttgctcatattttgattttccgccattcgtttatttgacttaacaaatgaatgagataaaactttggagcctctttcaaattt |
14716 |
T |
|
| Q |
216 |
gtatagccaatttggagaaataaatataatta |
247 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||| |
|
|
| T |
14715 |
gtattgcctatttggaaaaataaatataatta |
14684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1678 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold1678
Description:
Target: scaffold1678; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 1101 - 1336
Alignment:
| Q |
18 |
gaaaaacaatgtgatactaccaa--cttatataggagcatgcaataatcttgttccaatcgtttgtgtgtggtaattaactaattatggagtttgttata |
115 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1101 |
gaaaaacaatgtgatactacaaagtcttatgtaggagcatgcaagaatcttggtccaatcgtttgtgtgtggtaattaactaattatggagtttgttata |
1200 |
T |
|
| Q |
116 |
tttggaatgagaaagacttgctcatattttgatttttcaccattggtttatttgacttaacaaatgcattagataaaattttggagcctctttcaaattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| || |||||||| || |||||||||||||||||| |
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|
| T |
1201 |
attggaatgagaaagacttgctcatatttatattttacaccattgatttatttgacttaacaaatgaatgagataaaacttcggagcctctttcaaattt |
1300 |
T |
|
| Q |
216 |
gtatagccaatttggagaaataaatataattactat |
251 |
Q |
| |
|
|||| | ||||||| ||||||||||||||||||| |
|
|
| T |
1301 |
gtattatctatttggaaaaataaatataattactat |
1336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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