View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13716_low_16 (Length: 258)
Name: NF13716_low_16
Description: NF13716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13716_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 28283942 - 28284119
Alignment:
| Q |
29 |
aatttcatcaagtacttagaaactatattttttaaattctttttacaagttatagaaaaattcatcgatttcatccaac-aaaaggtccaaatattttca |
127 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
28283942 |
aatttcatcaagtacttagaaactaaatttattaaattctttttacaagttatagaaaaattcatctatttcatccaacaaaaaggtccaaatattttca |
28284041 |
T |
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| Q |
128 |
tgccaacttatttttggttgtcttcctactcgtggaaatttgactag-aaggggcatatgtgtttttggaaaagtgaggg |
206 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
28284042 |
tgccaaattatttttggttgtcttcctactcgtggaaatttgactagaaaggggc--atgtgtttttggaaaagtgaggg |
28284119 |
T |
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