View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13716_low_18 (Length: 226)
Name: NF13716_low_18
Description: NF13716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13716_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 32343554 - 32343357
Alignment:
| Q |
16 |
acacaattattggatgcttgtctcaggccactaggtcaaacctctcttgtatctcatattcttgtaagcttttttctaacctatacatattttacaaagt |
115 |
Q |
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| T |
32343554 |
acacaattattggatgcttgtctcaggccactaggtcaaacctctcttgtatctcatattcttgtaagcttttttctaacctatacatattttacaaagt |
32343455 |
T |
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| Q |
116 |
tcaatgatcatcataatgttaactattacctatgaaaccctaacatagatacggacactaaacacgacactgataataatttgagaaaataaagtatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32343454 |
tcaatgatcatcataatgttaactattacctatgaaaccctaacatagatacggacactaaacacgacactgataataatttgagaaaataaagtatt |
32343357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 35990585 - 35990557
Alignment:
| Q |
180 |
cgacactgataataatttgagaaaataaa |
208 |
Q |
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| T |
35990585 |
cgacactgataataatttgagaaaataaa |
35990557 |
T |
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